PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.C3MS1
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MIKC_MADS
Protein Properties Length: 262aa    MW: 30437.9 Da    PI: 9.6554
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.C3MS1genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF984e-313685150
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+++fss+g+lyey+
  Aradu.C3MS1 36 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYA 85
                 79***********************************************8 PP
2K-box107.21.9e-351042004100
        K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                  s+++s++ea+++ +qqe++kL+++i+ +q+ +Rh+lGe L+sLslkeL++Le++Lek+l+++Rs+K+e l++ +e +qk+e elq++n++Lr+k++e
  Aradu.C3MS1 104 SNTESVSEANTQFYQQESSKLRRQIRDIQNLNRHILGEALSSLSLKELKNLESRLEKGLSRVRSRKHETLFADVEFMQKREIELQNHNNYLRAKIAE 200
                  34455*****************************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.9642888IPR002100Transcription factor, MADS-box
SMARTSM004324.6E-422887IPR002100Transcription factor, MADS-box
CDDcd002651.51E-4429105No hitNo description
SuperFamilySSF554554.19E-3329106IPR002100Transcription factor, MADS-box
PROSITE patternPS0035003084IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-333050IPR002100Transcription factor, MADS-box
PfamPF003191.1E-263784IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-335065IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-336586IPR002100Transcription factor, MADS-box
PfamPF014861.1E-24111198IPR002487Transcription factor, K-box
PROSITE profilePS5129714.559114204IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0090376Biological Processseed trichome differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
KSQQNQGTME LPNQAPEEGS SQHHQKKMGR GKIEIKRIEN TTNRQVTFCK RRNGLLKKAY  60
ELSVLCDAEV ALVVFSSRGR LYEYANNSVR GTIERYKKAS AASSNTESVS EANTQFYQQE  120
SSKLRRQIRD IQNLNRHILG EALSSLSLKE LKNLESRLEK GLSRVRSRKH ETLFADVEFM  180
QKREIELQNH NNYLRAKIAE HERAQQQQQQ EQEQQNLMHG NMCEDQSTIA SQTYDRNFFP  240
VNLLDSNNHQ YSRQDHTALQ LV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P5e-2128100173Myocyte-specific enhancer factor 2B
1tqe_Q5e-2128100173Myocyte-specific enhancer factor 2B
1tqe_R5e-2128100173Myocyte-specific enhancer factor 2B
1tqe_S5e-2128100173Myocyte-specific enhancer factor 2B
6c9l_A5e-2128100173Myocyte-specific enhancer factor 2B
6c9l_B5e-2128100173Myocyte-specific enhancer factor 2B
6c9l_C5e-2128100173Myocyte-specific enhancer factor 2B
6c9l_D5e-2128100173Myocyte-specific enhancer factor 2B
6c9l_E5e-2128100173Myocyte-specific enhancer factor 2B
6c9l_F5e-2128100173Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.C3MS1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015973264.10.0floral homeotic protein AGAMOUS isoform X4
SwissprotQ93XH41e-123MADS1_VITVI; Agamous-like MADS-box protein MADS1
TrEMBLA0A445C3N10.0A0A445C3N1_ARAHY; Uncharacterized protein
STRINGGLYMA14G03100.11e-150(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68429102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.19e-99MIKC_MADS family protein
Publications ? help Back to Top
  1. Boss PK,Vivier M,Matsumoto S,Dry IB,Thomas MR
    A cDNA from grapevine (Vitis vinifera L.), which shows homology to AGAMOUS and SHATTERPROOF, is not only expressed in flowers but also throughout berry development.
    Plant Mol. Biol., 2001. 45(5): p. 541-53
    [PMID:11414613]
  2. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  3. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]