PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.C014Z
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 487aa    MW: 55522 Da    PI: 8.8702
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.C014ZgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR135.33.7e-1181140160
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrt 60 
                  kfY +Y++  GF +r+sk+ k+  +g i++++fvC++eg+r+++  +  +++r++++ tr+
  Aradu.C014Z  81 KFYTSYSRLKGFAIRNSKTVKN-AKGDIVRYNFVCNREGFRQKKWLDkLDRKREPKPITRC 140
                  6*****************9999.6677***************9987734555555555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.6E-981140IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.273255291IPR007527Zinc finger, SWIM-type
SMARTSM005750.004266293IPR006564Zinc finger, PMZ-type
PfamPF044348.0E-4268287IPR007527Zinc finger, SWIM-type
Gene3DG3DSA:4.10.60.101.6E-4394413IPR001878Zinc finger, CCHC-type
PROSITE profilePS501588.878397413IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MNNINQEAIS TSANHESAVP EPEDGVLNEE TLFDMSMLGD EEGFLNMTQT EAESESAQVP  60
SHVSVEDVLK MEFFTPGEAR KFYTSYSRLK GFAIRNSKTV KNAKGDIVRY NFVCNREGFR  120
QKKWLDKLDR KREPKPITRC LRTTSRCESL HAKLGGFVES RYGILDFITN FQRCVDFLRD  180
KEEELDFRSF YGTPVLHTHF QEIERSAVTL YTREVFYRFR ETLKRAVRFN IVDREDCENG  240
CCYVIQKYRR PESTWQVLHQ PQNGTFECNC RRMESYGIPC VHIIVVLVGI DIGYLPETLV  300
LKRWCRNAKN NVTFVRQVTE TGDAASRYRS RLGAFVDQCK HLAKVACLRE EDYKITEDVN  360
TQPNGEGGGG INDPVCVRTK GTGRGNVSQQ TKGPKKRKCS ACGKLGHRRT RCPIGADLRP  420
GCRGSQRVPK GRQAEAQATP SQTTRPDHLN CFASEVATGQ QELQMGAGTR KRKLRVELPN  480
TFPQFMS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1391397KGPKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.C014Z
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016182498.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_020968997.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_025684705.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A445ADV01e-138A0A445ADV0_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11042217
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.19e-19FAR1-related sequence 5