PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.B7QUS | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | FAR1 | ||||||||
Protein Properties | Length: 182aa MW: 20223.5 Da PI: 8.3186 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 26.1 | 2.9e-08 | 132 | 178 | 23 | 68 |
FAR1 23 krngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkv 68 +++g++ k+ f+C+++g re+++ + +++++ +++etrt+C+ k++v Aradu.B7QUS 132 DDEGNVLKKFFYCNRWGLREKKHYEkADRKKAHKVETRTNCNVKFVV 178 56789**************9998874677778999*******99988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.0E-6 | 132 | 178 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MGHWHLTVRC ELKKVVRVDL NIKVSGAGWC NGYIGGISSR YIHSESKGNS DFSGQWTNGW 60 SSDSDEEKVS KGLESPSRVS KESKPVERVN VSGLGDEGGT VPSSESPGGL GDQISDDVET 120 SMLSNSGYSI KDDEGNVLKK FFYCNRWGLR EKKHYEKADR KKAHKVETRT NCNVKFVVFL 180 DK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.B7QUS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016177949.1 | 3e-54 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_025684799.1 | 3e-54 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A445CRX5 | 2e-67 | A0A445CRX5_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF19132 | 2 | 5 |