PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.B59SF
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MIKC_MADS
Protein Properties Length: 162aa    MW: 18890.7 Da    PI: 8.9628
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.B59SFgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.12.3e-28959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krien+snrqvt+skR+ngilKKA+E+ vLCda+v++iif+ +gk+++y+s
  Aradu.B59SF  9 KRIENSSNRQVTYSKRKNGILKKAKEITVLCDAQVSLIIFAASGKMHDYIS 59
                 79***********************************************86 PP

2K-box63.21e-2171135165
        K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkki 65 
                  y+k+sgk+l++ak+e+l+ e++++kke++ +q e+Rhl+Ged++sL++keL+ Le++Le++l++ 
  Aradu.B59SF  71 YHKTSGKRLWDAKHENLNSEIERIKKENDGMQIELRHLKGEDINSLNYKELMGLEEALENGLQSM 135
                  7999**********************************************************874 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.721161IPR002100Transcription factor, MADS-box
CDDcd002651.22E-39280No hitNo description
SuperFamilySSF554554.45E-35296IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-28323IPR002100Transcription factor, MADS-box
PfamPF003194.3E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-283859IPR002100Transcription factor, MADS-box
PfamPF014862.4E-1282156IPR002487Transcription factor, K-box
PROSITE profilePS5129710.51684162IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MGRGKIEIKR IENSSNRQVT YSKRKNGILK KAKEITVLCD AQVSLIIFAA SGKMHDYISP  60
STTLIDILER YHKTSGKRLW DAKHENLNSE IERIKKENDG MQIELRHLKG EDINSLNYKE  120
LMGLEEALEN GLQSMEVYRM FRRNDKILEE ENRELNFILV PP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-171100195MEF2C
5f28_B1e-171100195MEF2C
5f28_C1e-171100195MEF2C
5f28_D1e-171100195MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00080ChIP-seqTransfer from AT5G20240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.B59SF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0953681e-133BT095368.1 Soybean clone JCVI-FLGm-7A22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020984686.11e-110floral homeotic protein PMADS 2 isoform X2
SwissprotQ0HA252e-89MADS9_VITVI; Agamous-like MADS-box protein MADS9
TrEMBLA0A0L9V1181e-103A0A0L9V118_PHAAN; Uncharacterized protein
STRINGXP_007161433.11e-102(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43553255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.11e-72MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]