PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.B59SF | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 162aa MW: 18890.7 Da PI: 8.9628 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 89.1 | 2.3e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien+snrqvt+skR+ngilKKA+E+ vLCda+v++iif+ +gk+++y+s Aradu.B59SF 9 KRIENSSNRQVTYSKRKNGILKKAKEITVLCDAQVSLIIFAASGKMHDYIS 59 79***********************************************86 PP | |||||||
2 | K-box | 63.2 | 1e-21 | 71 | 135 | 1 | 65 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkki 65 y+k+sgk+l++ak+e+l+ e++++kke++ +q e+Rhl+Ged++sL++keL+ Le++Le++l++ Aradu.B59SF 71 YHKTSGKRLWDAKHENLNSEIERIKKENDGMQIELRHLKGEDINSLNYKELMGLEEALENGLQSM 135 7999**********************************************************874 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.2E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.721 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.22E-39 | 2 | 80 | No hit | No description |
SuperFamily | SSF55455 | 4.45E-35 | 2 | 96 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.6E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.3E-22 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.6E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.6E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.4E-12 | 82 | 156 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 10.516 | 84 | 162 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MGRGKIEIKR IENSSNRQVT YSKRKNGILK KAKEITVLCD AQVSLIIFAA SGKMHDYISP 60 STTLIDILER YHKTSGKRLW DAKHENLNSE IERIKKENDG MQIELRHLKG EDINSLNYKE 120 LMGLEEALEN GLQSMEVYRM FRRNDKILEE ENRELNFILV PP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-17 | 1 | 100 | 1 | 95 | MEF2C |
5f28_B | 1e-17 | 1 | 100 | 1 | 95 | MEF2C |
5f28_C | 1e-17 | 1 | 100 | 1 | 95 | MEF2C |
5f28_D | 1e-17 | 1 | 100 | 1 | 95 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00080 | ChIP-seq | Transfer from AT5G20240 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.B59SF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT095368 | 1e-133 | BT095368.1 Soybean clone JCVI-FLGm-7A22 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020984686.1 | 1e-110 | floral homeotic protein PMADS 2 isoform X2 | ||||
Swissprot | Q0HA25 | 2e-89 | MADS9_VITVI; Agamous-like MADS-box protein MADS9 | ||||
TrEMBL | A0A0L9V118 | 1e-103 | A0A0L9V118_PHAAN; Uncharacterized protein | ||||
STRING | XP_007161433.1 | 1e-102 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4355 | 32 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G20240.1 | 1e-72 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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