PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.B11ZS
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GRAS
Protein Properties Length: 492aa    MW: 55803.4 Da    PI: 5.0814
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.B11ZSgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS424.77.8e-1301224922374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                  +e L +cA+a+s++d+e +++l+++l++++s +gdp+qRl ay++eAL arla s+s++y+al+++e +     e l+++++++e++P+lkf++l aN
  Aradu.B11ZS 122 KEMLCACAKAMSENDMETTEWLISELQKMVSISGDPVQRLGAYMLEALVARLATSGSTIYNALRCKEPT---GNELLSYMHMLYEICPYLKFGYLSAN 216
                  789*****************************************************************9...99************************ PP

         GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                    I ea++ e++vHiiDf+i+qG+QW++L++aLa+Rp+g+p++RiT +++++s   +   l+ +gerL+++A++++v+fef++l + + ++++l++L+
  Aradu.B11ZS 217 GSIAEAMKDENEVHIIDFQINQGVQWISLIKALAARPNGSPKIRITCFDDSTSAfaRGGGLNIVGERLSRIANSCKVQFEFHAL-EVSPSEVKLDDLD 313
                  **************************************************99889999*************************6.778999******* PP

         GRAS 196 vkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  ++pgE++aVn++++lh+l+desv+++  +r+++L+l k lsPkvv++veq++++++ +F+ rf+e+++yy a+f+s++a lpr+++eri+vE+++l+r
  Aradu.B11ZS 314 IRPGESIAVNFAMMLHHLPDESVDSRInHRNRLLRLAKFLSPKVVTLVEQDSNTSNLPFFPRFVETMNYYLAVFESIDAALPRDHKERINVEQHCLAR 411
                  ***********************988779********************************************************************* PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  e+vn++acegaer+erhe l+kWr r+e+aGF+p+pls+++++ ++ l + ++++ y++ee++g+l+lgWk+++L++ +aWr
  Aradu.B11ZS 412 EVVNLIACEGAERVERHEALKKWRLRFERAGFSPYPLSSYVNSLIRQLQESYPGQ-YTLEERDGALLLGWKNQSLIVSCAWR 492
                  *****************************************************77.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.98895473IPR005202Transcription factor GRAS
PfamPF035142.7E-127122492IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MSYSCYFLQS ENLNNNYPLL HNSEHYCTLE SSSTNQNSPS SLSFSPEITP MLKQDRVEHD  60
NESCLTHDQD DLSNKLRELE SAMLGSDADI LNTYGAAMIP QEYDSFLRWG KMMEVISRGD  120
LKEMLCACAK AMSENDMETT EWLISELQKM VSISGDPVQR LGAYMLEALV ARLATSGSTI  180
YNALRCKEPT GNELLSYMHM LYEICPYLKF GYLSANGSIA EAMKDENEVH IIDFQINQGV  240
QWISLIKALA ARPNGSPKIR ITCFDDSTSA FARGGGLNIV GERLSRIANS CKVQFEFHAL  300
EVSPSEVKLD DLDIRPGESI AVNFAMMLHH LPDESVDSRI NHRNRLLRLA KFLSPKVVTL  360
VEQDSNTSNL PFFPRFVETM NYYLAVFESI DAALPRDHKE RINVEQHCLA REVVNLIACE  420
GAERVERHEA LKKWRLRFER AGFSPYPLSS YVNSLIRQLQ ESYPGQYTLE ERDGALLLGW  480
KNQSLIVSCA WR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-601214925375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.B11ZS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015972996.10.0scarecrow-like protein 21 isoform X1
SwissprotQ8H1250.0SCL5_ARATH; Scarecrow-like protein 5
TrEMBLA0A445C3760.0A0A445C376_ARAHY; Uncharacterized protein
STRINGXP_007142381.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16533497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.10.0scarecrow-like 5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]