PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.B0G5C | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | C2H2 | ||||||||
Protein Properties | Length: 267aa MW: 29801.2 Da PI: 5.8708 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16 | 3.4e-05 | 241 | 264 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C+dC++ F++ + L++H + H Aradu.B0G5C 241 YGCKDCNRLFKTEDALNSHNKAkH 264 67*****************88766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 4.7E-6 | 241 | 265 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.365 | 241 | 267 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 243 | 264 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009294 | Biological Process | DNA mediated transformation | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010162 | Biological Process | seed dormancy process | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MEFWGVEVKS GETLEVDPGY GKMIHLSMAC LGEVKKDKGE PVTVYVKFGD QRLVIGTLTS 60 ENFPQISYDL IFEKEFELSH NWKNGKFEDI PVAAANGNSE LEVKNAVKLD ANEAKQKEKI 120 GDPRKKEKAN EKDANGEDEE DSSDADSDES DEDSSEDEVF LTHTKRMDHD AHAELSKKRV 180 HESSKKTPVP EKKAKFVTPE KIDNKGGVHV ATPYPTKQAI KAAANNRQPV KQQTPKLVGD 240 YGCKDCNRLF KTEDALNSHN KAKHSAK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 114 | 125 | KQKEKIGDPRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.B0G5C |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016208108.1 | 1e-154 | histone deacetylase HDT1 isoform X2 | ||||
Refseq | XP_025657799.1 | 1e-154 | histone deacetylase HDT1 isoform X1 | ||||
TrEMBL | A0A445CQ48 | 1e-159 | A0A445CQ48_ARAHY; Uncharacterized protein | ||||
STRING | XP_004494141.1 | 1e-92 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1025 | 30 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44750.2 | 5e-31 | histone deacetylase 3 |