PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.AYE3F
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 507aa    MW: 57333.3 Da    PI: 8.9044
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.AYE3FgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR146.71e-1461144191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r++ ++++   +ei+++  +C++egk +++ +      +++++   gC++  + k    g w ++k++l+H+H+ +p
  Aradu.AYE3F  61 KFYRNYAKAAGFSTRVRCTNRK--GNEIKNQLITCNREGKWKSKISP-----TEKTNPTAGCQCLDHFKGYAVGAWIISKVVLDHSHPYCP 144
                  6***************998776..8889*************999877.....555666789999999999999**************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.7E-1261144IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.198219255IPR007527Zinc finger, SWIM-type
PfamPF044342.0E-4228252IPR007527Zinc finger, SWIM-type
SMARTSM005758.0E-4230257IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MDPSSSDCVL NPGEVDYEFE SNEVPETLGC RSILLWPLSV VDDELVPKVG MTFTTLEDAG  60
KFYRNYAKAA GFSTRVRCTN RKGNEIKNQL ITCNREGKWK SKISPTEKTN PTAGCQCLDH  120
FKGYAVGAWI ISKVVLDHSH PYCPSKAEML KQHRELSMSI RCTIENNDEA DAYTHAKFRK  180
VQAQFRGKAN CITRLKNSAL GYSLYEVGEQ VSSSIFDNFA VTYDSVAAEV KCQCLLFESR  240
GILCRHALSV LSFEQVSQVS PRYILERWSK KVKRRHTHIK SSHDEPLMEP RSKRFDQLVF  300
RSQNICEFAS ESEELTAILH RAYDNVMAEM EALKGKRKGT SSLSHEDANL ESVNELQSPP  360
RIRTRGRPKN RLGSKLEKQI ANATKKKKTK VLSELMRECY IQINLFDAAS VAHSSCSQYQ  420
GQVINYQFRV PAAGDNSLVS GKHTPLYSGP PPPTIKKVTN LYLVFWPEIL TYDALISFSF  480
SPFSRGFPPA YVINLENTYP LNTKTNQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.AYE3F
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020986710.11e-164protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBLA0A445CV520.0A0A445CV52_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.22e-17far-red elongated hypocotyls 3