PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.AR5XA

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 418aa MW: 48437.8 Da PI: 6.7762

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.AR5XA	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	45.8	2.1e-14	69	137	1	69
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvk 69 +fY +Y+k+ GFs rksk+ k+ +gei+++ fvC ++g+r e+ + +++++++r etrtgCka++ Aradu.AR5XA 69 DFYMKYSKSKGFSARKSKTFKN-SSGEIYRQMFVCHRQGFRMEKYYTmEKRKKEPRLETRTGCKARMDHF 137 6***************9998.8899************998856777789**********755 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.0E-12	69	136	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.99	219	257	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence Send to blast
MDEQNEFEQD FRDEFTEGAF FSESDMSYYI LEAAYAVDSM QDITSLKFSE NVAEEIGKYH 60 FSTLHLAFDF YMKYSKSKGF SARKSKTFKN SSGEIYRQMF VCHRQGFRME KYYTMEKRKK 120 EPRLETRTGC KARMDHFQRC VAHMRFNEFN ADYESTRGVP VMQTCIELLE RYAAELYTHE 180 IFLFFRPFLS RAGSMRVLKI DNTNDCIKYI VCKHGRPDFT WTVDFHQEEM IFMCTCLRME 240 SFAIPCEHIV KVMVDRDIRE IPRSLVLDRW TKKVKSALND PSGFTRDAVV ISRQSALVEF 300 SKQLAAVAAK VPERYEETRD LIMGLYSSYK AADEGENQPH SGVARSSNLY VHPTTGGSGQ 360 PSKKKKRQRC SVCQMEGHKK TTCPWQKDTD NNVIENEAIG SDDGDMCTEA TAELDSNS

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence Send to blast

MDEQNEFEQD FRDEFTEGAF FSESDMSYYI LEAAYAVDSM QDITSLKFSE NVAEEIGKYH  60
FSTLHLAFDF YMKYSKSKGF SARKSKTFKN SSGEIYRQMF VCHRQGFRME KYYTMEKRKK  120
EPRLETRTGC KARMDHFQRC VAHMRFNEFN ADYESTRGVP VMQTCIELLE RYAAELYTHE  180
IFLFFRPFLS RAGSMRVLKI DNTNDCIKYI VCKHGRPDFT WTVDFHQEEM IFMCTCLRME  240
SFAIPCEHIV KVMVDRDIRE IPRSLVLDRW TKKVKSALND PSGFTRDAVV ISRQSALVEF  300
SKQLAAVAAK VPERYEETRD LIMGLYSSYK AADEGENQPH SGVARSSNLY VHPTTGGSGQ  360
PSKKKKRQRC SVCQMEGHKK TTCPWQKDTD NNVIENEAIG SDDGDMCTEA TAELDSNS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	363	368	KKKRQR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.AR5XA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015948670.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A444YFB3	0.0	A0A444YFB3_ARAHY; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-14	FAR1-related sequence 5