PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.AP5ZW

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

BES1

Protein Properties

Length: 649aa MW: 73216.7 Da PI: 6.4293

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.AP5ZW	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	152.1	4.4e-47	45	182	1	134
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslq.ss 97 +g+g+k+++kE+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+Vl+AL+r+AGwvve+DGttyr+ + p+ +++gs+a +s+es+l+ s Aradu.AP5ZW 45 AGKGKKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALARDAGWVVEADGTTYRQ-CPPP---SHVGSFAARSVESQLSgGS 138 5899****************************************************************5.4444...6************99 PP DUF822 98 lkssalaspvesysaspksssfpspssldsislasa.......a 134 l+ ++++ + ++ + ++ ++ +sp+s+ds+ +a+ + Aradu.AP5ZW 139 LRPCSVKETLGNQPPALRIDECLSPASIDSVVIAERdsknekyT 182 ********************************998765443332 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	5.8E-49	46	193	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
SuperFamily	SSF51445	1.03E-157	211	644	IPR017853	Glycoside hydrolase superfamily
Gene3D	G3DSA:3.20.20.80	1.8E-169	214	644	IPR013781	Glycoside hydrolase, catalytic domain
Pfam	PF01373	3.7E-85	236	609	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	9.5E-56	251	265	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	9.5E-56	272	290	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	9.5E-56	294	315	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	9.5E-56	387	409	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	9.5E-56	460	479	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	9.5E-56	494	510	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	9.5E-56	511	522	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	9.5E-56	529	552	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	9.5E-56	567	589	IPR001554	Glycoside hydrolase, family 14

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0048831	Biological Process	regulation of shoot system development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 649 aa Download sequence Send to blast
MKTINDDASA QDLDPQSDHS SDYLLTSNPQ PRRPRGFAAA AANPAGKGKK EREKEKERTK 60 LRERHRRAIT SRMLAGLRQY GNFPLPARAD MNDVLAALAR DAGWVVEADG TTYRQCPPPS 120 HVGSFAARSV ESQLSGGSLR PCSVKETLGN QPPALRIDEC LSPASIDSVV IAERDSKNEK 180 YTSASPVNVV HCLEADQLIH DIHSGVHEND FTCTPYVPVY SKLPAGIINK FCQLIDPEGI 240 RQELIHLKSL NMDGVIVDCW WGIVEGWNPQ KYVWSGYRDL FSIIREFKLK LQVVMAFHEC 300 GGNGSSDALI ALPQWVLDMG KDNPDIFFTD REGRRNTECL SWGIDKERVL KGRTGIEVYF 360 DMMRSFRTEF DDLFAEGLIS AVEIGLGASG ELKYPSFSER MGWRYPGIGE FQCYDKYLQH 420 SLRMAAKLRG RSFWARGPDN AGHYNSMPHE TGFFCERGDY DNYYGRFFLH WYSQTLIDHA 480 DNVLSLASLA FEDTKLVVKV PAVYWWYKTP SHAAELTAGY HNPTNQDGYS PVFEILRKHS 540 VTMKFVCVGF HLSNQEANES LIDPEGLSWQ VLNSAWDRGL VTAGENAPLC YDREGYKRLV 600 EMAKPSNDPD RRHFSFFVVR QPSMLQGNVC LSELDFFVKS MHGEITGAI

Sequence ? help Back to Top

Protein Sequence Length: 649 aa Download sequence Send to blast

MKTINDDASA QDLDPQSDHS SDYLLTSNPQ PRRPRGFAAA AANPAGKGKK EREKEKERTK  60
LRERHRRAIT SRMLAGLRQY GNFPLPARAD MNDVLAALAR DAGWVVEADG TTYRQCPPPS  120
HVGSFAARSV ESQLSGGSLR PCSVKETLGN QPPALRIDEC LSPASIDSVV IAERDSKNEK  180
YTSASPVNVV HCLEADQLIH DIHSGVHEND FTCTPYVPVY SKLPAGIINK FCQLIDPEGI  240
RQELIHLKSL NMDGVIVDCW WGIVEGWNPQ KYVWSGYRDL FSIIREFKLK LQVVMAFHEC  300
GGNGSSDALI ALPQWVLDMG KDNPDIFFTD REGRRNTECL SWGIDKERVL KGRTGIEVYF  360
DMMRSFRTEF DDLFAEGLIS AVEIGLGASG ELKYPSFSER MGWRYPGIGE FQCYDKYLQH  420
SLRMAAKLRG RSFWARGPDN AGHYNSMPHE TGFFCERGDY DNYYGRFFLH WYSQTLIDHA  480
DNVLSLASLA FEDTKLVVKV PAVYWWYKTP SHAAELTAGY HNPTNQDGYS PVFEILRKHS  540
VTMKFVCVGF HLSNQEANES LIDPEGLSWQ VLNSAWDRGL VTAGENAPLC YDREGYKRLV  600
EMAKPSNDPD RRHFSFFVVR QPSMLQGNVC LSELDFFVKS MHGEITGAI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wdq_A	1e-124	216	644	11	444	Beta-amylase
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00543	DAP	Transfer from AT5G45300	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.AP5ZW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015963139.1	0.0	beta-amylase 8
Swissprot	Q9FH80	0.0	BAM8_ARATH; Beta-amylase 8
TrEMBL	A0A1S3VRD4	0.0	A0A1S3VRD4_VIGRR; Beta-amylase
STRING	XP_007158095.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11902	30	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45300.1	0.0	beta-amylase 2

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]