PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.A4KG4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | AP2 | ||||||||
Protein Properties | Length: 237aa MW: 27191.4 Da PI: 4.4984 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 21.7 | 5.1e-07 | 6 | 52 | 8 | 55 |
AP2 8 wdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +++++gr++A+++d ++n ++ g+ t eeAa a++ a+ +++g Aradu.A4KG4 6 RHRWTGRYEAHLWDkNCWNEsQN---KKGRQATQEEAATAYDMAAIEYRG 52 6999**********888876444...44888999**************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 13.287 | 1 | 60 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.94E-9 | 6 | 62 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.6E-9 | 6 | 66 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.4E-9 | 6 | 61 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.41E-11 | 6 | 62 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MAVLPRHRWT GRYEAHLWDK NCWNESQNKK GRQATQEEAA TAYDMAAIEY RGLNAVTNFD 60 LSRYIKWLKP NNNSNENDHN NNNNNNRISF NLAAAVAVDY VNPNCNNTNF TPNFNNNSLF 120 NHEPLFINNN NIDNNNNNGS KLGQARPGAT SALELLLQSS KFKEMMEMTS SVANNNNNNP 180 STPAECSDEL PQCNFPDDIQ TYFEYEDSNK YEEGDHDTLF NEIHSFVPMF HCDDFEN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.A4KG4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015935090.1 | 1e-111 | AP2-like ethylene-responsive transcription factor At1g16060 | ||||
Refseq | XP_025677875.1 | 1e-111 | AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | A0A445EN64 | 1e-110 | A0A445EN64_ARAHY; Uncharacterized protein | ||||
STRING | XP_007154853.1 | 1e-63 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1300 | 34 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17430.1 | 2e-18 | AP2 family protein |