PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.9ND07

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

TALE

Protein Properties

Length: 628aa MW: 69593.1 Da PI: 6.5439

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.9ND07	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.8	2.1e-09	379	416	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +e+ LA+++gLt +qV +WF N R + Aradu.9ND07 379 FEHflHPYPKDSEKIMLARQTGLTRNQVANWFINARVR 416 665559******************************88 PP
2	BELL	124.4	4.4e-40	250	321	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +rq+l kk+kLl +l+eVdkrY+qy++q+q+v+ssF++vag+g+a+pYt+lAl++iSrhFrcL+dai++qi Aradu.9ND07 250 DRQNLLDKKTKLLAMLDEVDKRYRQYCHQMQIVVSSFDMVAGCGAAEPYTALALRTISRHFRCLRDAISGQI 321 5788999****************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	2.1E-58	168	319	IPR006563	POX domain
Pfam	PF07526	1.1E-50	176	318	IPR006563	POX domain
PROSITE profile	PS50071	12.438	357	420	IPR001356	Homeobox domain
CDD	cd00086	1.86E-12	360	421	No hit	No description
SMART	SM00389	1.6E-9	360	424	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.27E-17	361	427	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.6E-28	363	426	IPR009057	Homeodomain-like
Pfam	PF05920	3.0E-17	377	416	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 628 aa Download sequence Send to blast
MLSGNSLLTH HNYGDSVGGG GHNNELKFIT SLGESMTMQP LEEHSNAAAT GNPSCNSFGD 60 QNIQCQGLSL SLGSVMPSIA TSMPHHFQYP QYHNSSFTSL MNAMPNLKGN NGSSLKDDEV 120 RNTECMTPPM SSGGFYNSIK REGLYNNTNH PSMCLSEGQV DPGLHGSAGF SSSTALNSQY 180 LKAAQELLDE IVNVRKALKQ PGLEKQQSFR DAGLDGSKDS DGKSNSQSMQ VSSGANGSAV 240 NSSTELSPAD RQNLLDKKTK LLAMLDEVDK RYRQYCHQMQ IVVSSFDMVA GCGAAEPYTA 300 LALRTISRHF RCLRDAISGQ IQVTQRSLGE QEGIPRLRYV DQQLRQQKAL QQLGVMRQAW 360 RPQRGLPESS VSILRAWLFE HFLHPYPKDS EKIMLARQTG LTRNQVANWF INARVRLWKP 420 MVEEMYKEEF GDSEMSCNLL SENTIPKASR DDVQVSDNNK REESQENLAA VDDSVQHGIQ 480 SSDYGENLMD SSSSRTSRKL QQCDQRFNMK NTPFSNASTI QINHHNGHDD GNGCLASTHA 540 TYDYSALGNF AAVGGHVSLA LELRNRESNG LGMSNGDEIH NKRSSNQTLA SSSENDLLDY 600 HLTEQEKQQQ QQHKFGNPQQ RLLHEFVV

Sequence ? help Back to Top

Protein Sequence Length: 628 aa Download sequence Send to blast

MLSGNSLLTH HNYGDSVGGG GHNNELKFIT SLGESMTMQP LEEHSNAAAT GNPSCNSFGD  60
QNIQCQGLSL SLGSVMPSIA TSMPHHFQYP QYHNSSFTSL MNAMPNLKGN NGSSLKDDEV  120
RNTECMTPPM SSGGFYNSIK REGLYNNTNH PSMCLSEGQV DPGLHGSAGF SSSTALNSQY  180
LKAAQELLDE IVNVRKALKQ PGLEKQQSFR DAGLDGSKDS DGKSNSQSMQ VSSGANGSAV  240
NSSTELSPAD RQNLLDKKTK LLAMLDEVDK RYRQYCHQMQ IVVSSFDMVA GCGAAEPYTA  300
LALRTISRHF RCLRDAISGQ IQVTQRSLGE QEGIPRLRYV DQQLRQQKAL QQLGVMRQAW  360
RPQRGLPESS VSILRAWLFE HFLHPYPKDS EKIMLARQTG LTRNQVANWF INARVRLWKP  420
MVEEMYKEEF GDSEMSCNLL SENTIPKASR DDVQVSDNNK REESQENLAA VDDSVQHGIQ  480
SSDYGENLMD SSSSRTSRKL QQCDQRFNMK NTPFSNASTI QINHHNGHDD GNGCLASTHA  540
TYDYSALGNF AAVGGHVSLA LELRNRESNG LGMSNGDEIH NKRSSNQTLA SSSENDLLDY  600
HLTEQEKQQQ QQHKFGNPQQ RLLHEFVV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrs_A	2e-16	366	423	1	58	Homeobox protein Meis1
4xrs_B	2e-16	366	423	1	58	Homeobox protein Meis1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269\|PubMed:16513846}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.9ND07

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT136990	1e-93	BT136990.1 Lotus japonicus clone JCVI-FLLj-16H21 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015969671.1	0.0	BEL1-like homeodomain protein 7 isoform X1
Refseq	XP_015969672.1	0.0	BEL1-like homeodomain protein 7 isoform X1
Swissprot	Q9FWS9	1e-112	BLH3_ARATH; BEL1-like homeodomain protein 3
TrEMBL	A0A445CK32	0.0	A0A445CK32_ARAHY; Uncharacterized protein
STRING	XP_007160715.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2146	31	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16400.1	1e-104	BEL1-like homeodomain 7

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]