PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.9MQ2E
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 320aa    MW: 36410.9 Da    PI: 6.527
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.9MQ2EgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.37.5e-084388346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     +WT++E +++ +a +++ ++   +W ++a++++ g+t  +++  ++ 
      Aradu.9MQ2E 43 KWTPQENKQFENALALFDKEtpdRWLKVAAMIP-GKTVGDVIKQYRE 88
                     8*****************99*************.*******999986 PP
2Myb_DNA-binding47.54.2e-15151195347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky
      Aradu.9MQ2E 151 PWTEEEHRLFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKY 195
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.1823994IPR017884SANT domain
SMARTSM007174.8E-94092IPR001005SANT/Myb domain
SuperFamilySSF466891.65E-114298IPR009057Homeodomain-like
PfamPF002491.1E-64389IPR001005SANT/Myb domain
CDDcd001675.68E-74390No hitNo description
Gene3DG3DSA:1.10.10.604.9E-13142201IPR009057Homeodomain-like
PROSITE profilePS5129420.858144200IPR017930Myb domain
SuperFamilySSF466891.66E-17145199IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-17147199IPR006447Myb domain, plants
SMARTSM007171.7E-13148198IPR001005SANT/Myb domain
PfamPF002491.7E-12151195IPR001005SANT/Myb domain
CDDcd001673.67E-11151196No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MYATIGYSLL EEEEEMNRGI EVLSPASYLH NSNWLFQESA GTKWTPQENK QFENALALFD  60
KETPDRWLKV AAMIPGKTVG DVIKQYRELV EDVNVIESGF IPIPGGTTDG SFTLEWVDNH  120
EFDGFKQFYG VGCKRGSSTR PSEQERKKGV PWTEEEHRLF LMGLKKYGKG DWRNISRNFV  180
TTRTPTQVAS HAQKYFIRQL NGGKDKRRSS IHDITMVNLP ETKSPSSESN KPPSPDANLN  240
QSQKLLSSMV KQEYDWKSPP YEGVPLVFDS TNGNSFMTPL CGASSYGSKP QEQYLLRGTF  300
HGFQFGPYDT FMQMQPMQPQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-1640110777RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00296DAPTransfer from AT2G38090Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.9MQ2E
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015950297.10.0transcription factor DIVARICATA
SwissprotQ8S9H71e-116DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A445AK090.0A0A445AK09_ARAHY; Uncharacterized protein
STRINGGLYMA03G14440.11e-171(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-112MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]