PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.9FL9L
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MIKC_MADS
Protein Properties Length: 166aa    MW: 19406.6 Da    PI: 10.3239
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.9FL9LgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF849e-271868151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 k i+n++ rqvtfskRrng+lKK + LSvLCdaeva+iifs++gklye+ss
  Aradu.9FL9L 18 KCIKNETSRQVTFSKRRNGLLKKTFKLSVLCDAEVALIIFSTRGKLYEFSS 68
                 579**********************************************96 PP
2K-box523e-18941661183
        K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 
                  +++++  + +  ++ k++e+L+ ++R+llG++L+s+ ++eLqq+e+qLe+sl+k+R++K++ lle+ ++l++k
  Aradu.9FL9L  94 QENTQVKEGDDINITKKLEQLEVSKRKLLGDGLDSCPIEELQQIENQLERSLTKVRARKEKCLLEENRKLKEK 166
                  444555555666899******************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.8E-271069IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-251232IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.5E-291583IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.1561670IPR002100Transcription factor, MADS-box
CDDcd002653.56E-341679No hitNo description
PfamPF003193.5E-232066IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-253247IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-254768IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.06697166IPR002487Transcription factor, K-box
PfamPF014862.5E-16104166IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MTNKRFSLLW LQATCQMKCI KNETSRQVTF SKRRNGLLKK TFKLSVLCDA EVALIIFSTR  60
GKLYEFSSSS VNKIVERYQR KVKDLHSLNT KQIQENTQVK EGDDINITKK LEQLEVSKRK  120
LLGDGLDSCP IEELQQIENQ LERSLTKVRA RKEKCLLEEN RKLKEK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1c7u_A2e-161578568MYOCYTE-SPECIFIC ENHANCER FACTOR 2A, C4 FORM
1c7u_B2e-161578568MYOCYTE-SPECIFIC ENHANCER FACTOR 2A, C4 FORM
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that promotes flowering, especially in response to vernalization by short periods of cold, in an FLC-inpedendent manner. {ECO:0000269|PubMed:16778081}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.9FL9L
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Maintained at very low levels by the polycomb-group (PcG) proteins MSI1, CLF, and EMF2 via histone methylation (H3K27me3). Derepressed upon cold treatment (vernalization). {ECO:0000269|PubMed:16778081}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020997060.13e-98agamous-like MADS-box protein AGL19 isoform X2
RefseqXP_025703608.12e-98agamous-like MADS-box protein AGL19 isoform X2
SwissprotO827432e-59AGL19_ARATH; Agamous-like MADS-box protein AGL19
TrEMBLA0A445ATZ72e-93A0A445ATZ7_ARAHY; Uncharacterized protein
STRINGXP_004515788.11e-65(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66630102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22950.17e-52AGAMOUS-like 19
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Suter L,Rüegg M,Zemp N,Hennig L,Widmer A
    Gene regulatory variation mediates flowering responses to vernalization along an altitudinal gradient in Arabidopsis.
    Plant Physiol., 2014. 166(4): p. 1928-42
    [PMID:25339407]