PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.986KM
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family TALE
Protein Properties Length: 298aa    MW: 33749.3 Da    PI: 6.5973
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.986KMgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.23.2e-09229284355
                  --SS--HHHHHHHHHHHH...HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
     Homeobox   3 kRttftkeqleeLeelFe...knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                  kR ++ k+  ++L +  +   k +yp+++++  LAk++gL+++q+ +WF N+R ++
  Aradu.986KM 229 KRGKLPKDARQTLLQWWNihyKWPYPTEADKVALAKSTGLDQKQINNWFINQRKRH 284
                  555555566666655555443679*****************************885 PP
2ELK28.82.8e-10204225122
          ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                  +LK+ LlrK++++++sLk EFs
  Aradu.986KM 204 DLKDKLLRKFGSHISSLKFEFS 225
                  69*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012556.5E-2390134IPR005540KNOX1
PfamPF037901.5E-2292133IPR005540KNOX1
SMARTSM012563.2E-26140191IPR005541KNOX2
PfamPF037913.2E-25143190IPR005541KNOX2
PfamPF037892.3E-7204225IPR005539ELK domain
SMARTSM011883.6E-5204225IPR005539ELK domain
PROSITE profilePS512139.551204224IPR005539ELK domain
PROSITE profilePS5007113.119224287IPR001356Homeobox domain
SuperFamilySSF466895.56E-19225293IPR009057Homeodomain-like
SMARTSM003892.4E-14226291IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.7E-28229288IPR009057Homeodomain-like
CDDcd000861.31E-13236288No hitNo description
PfamPF059203.2E-17244283IPR008422Homeobox KN domain
PROSITE patternPS000270262285IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MEDEMYGVPP SSTTVYSDRA PLTPDNLIFP VEYHSFLMST GARIPMFGSD ELLSAAASGV  60
TAITEAEPSS NIVVPEILQR HHSHDAASSS HMKAKIASHP YYPRLLQAYI DCQKVGAPPE  120
IASLLEEIQR ENDLCKGDVN STCIGADPEL DEFMETYCDM LVKYKCDLTR PFEEASSFLN  180
KIETQLSNLC CTGASAPASL SDRDLKDKLL RKFGSHISSL KFEFSKKKKR GKLPKDARQT  240
LLQWWNIHYK WPYPTEADKV ALAKSTGLDQ KQINNWFINQ RKRHWKPSEN MQFNFYEG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1225232KKKKRGKL
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.986KM
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015957122.10.0homeobox protein knotted-1-like 2
RefseqXP_016193613.10.0homeobox protein knotted-1-like 2
RefseqXP_025638758.10.0homeobox protein knotted-1-like 2
RefseqXP_025690507.10.0homeobox protein knotted-1-like 2
SwissprotQ84JS61e-117KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLA0A445DPR50.0A0A445DPR5_ARAHY; Uncharacterized protein
STRINGXP_007153755.11e-147(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62034125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.11e-100KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]