PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.95Z4F | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 206aa MW: 23192.7 Da PI: 10.1565 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92.6 | 1.9e-29 | 30 | 80 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+ +qvtfskRr+g+lKKA+E+SvLCda+va+i+fs++gkl+eyss Aradu.95Z4F 30 KRIENKTSQQVTFSKRRTGLLKKAHEISVLCDAQVALIMFSTKGKLFEYSS 80 79***********************************************96 PP | |||||||
2 | K-box | 59.3 | 1.6e-20 | 80 | 136 | 33 | 89 |
K-box 33 reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 +e R+++G+dL++Lsl+eLq+LeqqL+ slk+iR +Kn+++ ++i+el k++k+ ++ Aradu.95Z4F 80 SESRNFVGNDLDPLSLRELQSLEQQLDASLKRIRIRKNQVMNQSISELNKRMKDKEK 136 678************************************************998776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.7E-38 | 22 | 81 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.258 | 22 | 82 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.58E-28 | 23 | 86 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.03E-35 | 23 | 82 | No hit | No description |
PRINTS | PR00404 | 7.3E-30 | 24 | 44 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.6E-24 | 31 | 78 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.3E-30 | 44 | 59 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.3E-30 | 59 | 80 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 9.781 | 61 | 150 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.4E-16 | 78 | 136 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MRARDIINNK KKNSDCEKEG KMGRGRVQLK RIENKTSQQV TFSKRRTGLL KKAHEISVLC 60 DAQVALIMFS TKGKLFEYSS ESRNFVGNDL DPLSLRELQS LEQQLDASLK RIRIRKNQVM 120 NQSISELNKR MKDKEKTMSE GPQVCLETLG KSTPNINLSS QDHLPPQRLV PCLNLSGTIL 180 EETAEAQDGA GGSTVIPPWM LQHLTS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-18 | 22 | 96 | 1 | 68 | MEF2C |
5f28_B | 2e-18 | 22 | 96 | 1 | 68 | MEF2C |
5f28_C | 2e-18 | 22 | 96 | 1 | 68 | MEF2C |
5f28_D | 2e-18 | 22 | 96 | 1 | 68 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.95Z4F |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT098571 | 1e-59 | BT098571.1 Soybean clone JCVI-FLGm-16N7 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020996850.1 | 1e-122 | truncated transcription factor CAULIFLOWER A | ||||
Swissprot | D7SMN6 | 8e-53 | FULL_VITVI; Agamous-like MADS-box protein FUL-L | ||||
TrEMBL | A0A444WN02 | 1e-118 | A0A444WN02_ARAHY; Uncharacterized protein | ||||
STRING | AES77739 | 3e-78 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF588 | 32 | 119 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60910.1 | 7e-39 | AGAMOUS-like 8 |
Publications ? help Back to Top | |||
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