PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.93TCK | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | WRKY | ||||||||
Protein Properties | Length: 354aa MW: 39814 Da PI: 10.3407 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99.2 | 2.6e-31 | 288 | 346 | 3 | 60 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ e+p+++++tYegeHnh+k Aradu.93TCK 288 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEEPTMLIVTYEGEHNHPK 346 99***********************9988****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 5.6E-17 | 239 | 284 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 2.0E-33 | 274 | 346 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.998 | 281 | 347 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.23E-27 | 284 | 346 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.7E-38 | 286 | 346 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.5E-27 | 288 | 345 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MEEVEQANRL AVESCHRVLS ILSQPRDQVQ NRNLMVETGE AVLRFKKVVS LLQNGLGHAR 60 VRKHRKLQVP FSQSILLDNP NCFKNNNNNL NHDQSKKVVM LHENSVQELG SSTVRNSLSL 120 VNPSLELSSS AKSTINQQGS SSSHYQFLQQ QQIQQQRLLM QQQQQQQQMK NHAEMMFRRN 180 NSGINLNFDS TSCTPTMSST TRSFISSLSI DGSVANLDGS SFHLIGAPLS SDQNSQQHKR 240 KCSARGDEGS VKCGSSARCH CSKKRKHRVK RSIKVPAISN KLADIPPDDY SWRKYGQKPI 300 KGSPHPRGYY KCSSMRGCPA RKHVERCLEE PTMLIVTYEG EHNHPKLPTQ SANA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-20 | 279 | 348 | 7 | 75 | WRKY transcription factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00284 | DAP | Transfer from AT2G30590 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.93TCK |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031237 | 0.0 | KT031237.1 Glycine max clone HN_CCL_17 WRKY transcription factor (Glyma10g03820.2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015948503.1 | 0.0 | probable WRKY transcription factor 21 | ||||
Refseq | XP_025643516.1 | 0.0 | probable WRKY transcription factor 21 | ||||
Swissprot | O04336 | 1e-128 | WRK21_ARATH; Probable WRKY transcription factor 21 | ||||
TrEMBL | A0A445A986 | 0.0 | A0A445A986_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA02G15920.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2637 | 34 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30590.1 | 1e-109 | WRKY DNA-binding protein 21 |