PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.92XHB
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MIKC_MADS
Protein Properties Length: 171aa    MW: 20151.1 Da    PI: 10.2581
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.92XHBgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.52.3e-30959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gkl+eyss
  Aradu.92XHB  9 KRIENKINRQVTFSKRRSGLLKKANEISVLCDAEVALIVFSTKGKLFEYSS 59
                 79***********************************************96 PP
2K-box102.17.4e-3478169797
        K-box   7 ks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                   s  ++  +e++  e+akLk+++e L r+qR+++Ge+L++LslkeLq+Le+qLe++lk+iRs+Kn++++e+i+elqkk k+lqe+n+ L kk
  Aradu.92XHB  78 ISnDQQPPNENWILEHAKLKARVEVLHRNQRNFMGEGLDTLSLKELQNLEHQLESALKHIRSRKNQVMYESISELQKKDKALQEQNNVLAKK 169
                  4435667789******************************************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.973161IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-39160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.53E-31284IPR002100Transcription factor, MADS-box
CDDcd002652.42E-37276No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-31323IPR002100Transcription factor, MADS-box
PfamPF003191.6E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-313859IPR002100Transcription factor, MADS-box
PfamPF014862.3E-2882169IPR002487Transcription factor, K-box
PROSITE profilePS5129716.15886171IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KANEISVLCD AEVALIVFST KGKLFEYSSD  60
PWILERYERY SYAEKQLISN DQQPPNENWI LEHAKLKARV EVLHRNQRNF MGEGLDTLSL  120
KELQNLEHQL ESALKHIRSR KNQVMYESIS ELQKKDKALQ EQNNVLAKKN W
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A6e-21171173MEF2 CHIMERA
6byy_B6e-21171173MEF2 CHIMERA
6byy_C6e-21171173MEF2 CHIMERA
6byy_D6e-21171173MEF2 CHIMERA
6bz1_A6e-21171173MEF2 CHIMERA
6bz1_B6e-21171173MEF2 CHIMERA
6bz1_C6e-21171173MEF2 CHIMERA
6bz1_D6e-21171173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.92XHB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015943765.11e-117truncated transcription factor CAULIFLOWER A isoform X1
SwissprotQ401704e-90AGL8_SOLLC; Agamous-like MADS-box protein AGL8 homolog
TrEMBLA0A445EJZ21e-112A0A445EJZ2_ARAHY; Uncharacterized protein
STRINGXP_004508656.11e-100(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.14e-92AGAMOUS-like 8