PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.91WCT
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MIKC_MADS
Protein Properties Length: 384aa    MW: 43810.2 Da    PI: 8.1834
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.91WCTgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF61.87.9e-202063245
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                 + en   rq t++kR+ngi+KKA ELS+LCd+++ +++fs+tgk
  Aradu.91WCT 20 KLENMNGRQATYAKRKNGIIKKATELSILCDIDIILLMFSPTGK 63
                 6799999***********************************97 PP
2K-box14.91.1e-061201911082
        K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLs.lkeLqqLeqqLekslkkiRskKnellleqieelqk 82 
                  ++++ e l+++++ L+ +i++ q  +R  ++++ e+++ +++L+q+e+ L +s+++iR++K+++  +q+  lq 
  Aradu.91WCT 120 SSQTIEDLSNQARLLQTQISETQ--KRLSQWKEFEKINnVEQLEQMENSLRDSINQIRNRKEHIKNQQLVSLQC 191
                  34445555555555555555544..46778999999963889*********************99999888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.4221163IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-261170IPR002100Transcription factor, MADS-box
CDDcd001205.28E-231264No hitNo description
SuperFamilySSF554557.98E-2412105IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-161333IPR002100Transcription factor, MADS-box
PfamPF003191.3E-172164IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-163348IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-164869IPR002100Transcription factor, MADS-box
PROSITE profilePS512976.715117211IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
DCYKDVKWCR MGRVKLKIKK LENMNGRQAT YAKRKNGIIK KATELSILCD IDIILLMFSP  60
TGKPSLCRGR RSNFEEVIAK FSQLTPQERA KRKLESLEAL KKTFKKLDHD VNIQEFLGTS  120
SQTIEDLSNQ ARLLQTQISE TQKRLSQWKE FEKINNVEQL EQMENSLRDS INQIRNRKEH  180
IKNQQLVSLQ CNNQFNEMHI PFRMGTEQHL QPLPWIGNGD SPNLVLPDDS SLLLHKDVEG  240
SASSSFGSYA SYIGSSSKTD ISNSGQENGV LSDLSSTTAP LRLPLNNGHQ FPYMPSYNFN  300
LLNDFKFQAA PEMNHHHNQP QENHNLSFHH HVNNGNFEAP RNAYDSNHHH HHGWASTSGP  360
CAVTMFDEHL YAQASLPQVN FGST
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.91WCT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015956913.10.0agamous-like MADS-box protein AGL30 isoform X1
RefseqXP_015956915.10.0agamous-like MADS-box protein AGL30 isoform X1
RefseqXP_016190919.10.0agamous-like MADS-box protein AGL30 isoform X1
RefseqXP_016190920.10.0agamous-like MADS-box protein AGL30 isoform X1
RefseqXP_020975401.10.0agamous-like MADS-box protein AGL30 isoform X1
RefseqXP_020994910.10.0agamous-like MADS-box protein AGL30 isoform X1
RefseqXP_025639091.10.0agamous-like MADS-box protein AGL30 isoform X1
RefseqXP_025639092.10.0agamous-like MADS-box protein AGL30 isoform X1
RefseqXP_025690783.10.0agamous-like MADS-box protein AGL30 isoform X1
RefseqXP_025690784.10.0agamous-like MADS-box protein AGL30 isoform X1
RefseqXP_025690785.10.0agamous-like MADS-box protein AGL30 isoform X1
RefseqXP_029147616.10.0agamous-like MADS-box protein AGL30 isoform X1
SwissprotQ1PFA41e-104AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBLA0A444ZUG40.0A0A444ZUG4_ARAHY; Uncharacterized protein
STRINGXP_007158646.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27503370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.22e-81AGAMOUS-like 30
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]