PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.904VK
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 324aa    MW: 36503.3 Da    PI: 9.2094
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.904VKgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.81.9e-13230322397
                  EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  k l +s+   ++ l+lp +fa ++g ++ +   +++   +g  +++ l++++++++ ++lt+GWk+ ++ ng ++g ++ F+++  +e++++v+v+
  Aradu.904VK 230 KLL-TSNQVDNSSLILPLQFA-QNGFPS-RYNNVKVILYNGCCYRLGLRWNNSRKGqVYLTRGWKSLARKNGFRSGTVLKFHVSPADETTMHVQVL 322
                  455.555555566********.775554.33467777777*********97776667*************************88779999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.4E-46106IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-730105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.37E-12225322IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.265227324IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-11228323IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.0E-4228323IPR003340B3 DNA binding domain
CDDcd100171.65E-9228323No hitNo description
PfamPF023628.2E-10230322IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MMAIEKRLIP SDFDDDRIFY LHVDPLAIIH ELPSLFYRKY RPLLGERMIV MDLNNTHIEL  60
SLCKGNSSGY IVHGFENLVN CFGLSSGGWI KIMYVGEDVF VVMKVKDSFM ATKELSYPSP  120
KLASNYYHVT HESTSRAPPL PDETLPTGEL RNGSVILPTR IFNNLSQAQT SPLPAGYVSL  180
EEKVILNNPT SLLVKRQISS PQNADETNIP PPVMPAPIIP TMSSMYTCMK LLTSNQVDNS  240
SLILPLQFAQ NGFPSRYNNV KVILYNGCCY RLGLRWNNSR KGQVYLTRGW KSLARKNGFR  300
SGTVLKFHVS PADETTMHVQ VLKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.904VK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015940715.11e-122uncharacterized protein LOC107466241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.16e-07B3 family protein