PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.904VK | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | B3 | ||||||||
Protein Properties | Length: 324aa MW: 36503.3 Da PI: 9.2094 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 41.8 | 1.9e-13 | 230 | 322 | 3 | 97 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 k l +s+ ++ l+lp +fa ++g ++ + +++ +g +++ l++++++++ ++lt+GWk+ ++ ng ++g ++ F+++ +e++++v+v+ Aradu.904VK 230 KLL-TSNQVDNSSLILPLQFA-QNGFPS-RYNNVKVILYNGCCYRLGLRWNNSRKGqVYLTRGWKSLARKNGFRSGTVLKFHVSPADETTMHVQVL 322 455.555555566********.775554.33467777777*********97776667*************************88779999999997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.4E-4 | 6 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.96E-7 | 30 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.37E-12 | 225 | 322 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.265 | 227 | 324 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-11 | 228 | 323 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.0E-4 | 228 | 323 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.65E-9 | 228 | 323 | No hit | No description |
Pfam | PF02362 | 8.2E-10 | 230 | 322 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MMAIEKRLIP SDFDDDRIFY LHVDPLAIIH ELPSLFYRKY RPLLGERMIV MDLNNTHIEL 60 SLCKGNSSGY IVHGFENLVN CFGLSSGGWI KIMYVGEDVF VVMKVKDSFM ATKELSYPSP 120 KLASNYYHVT HESTSRAPPL PDETLPTGEL RNGSVILPTR IFNNLSQAQT SPLPAGYVSL 180 EEKVILNNPT SLLVKRQISS PQNADETNIP PPVMPAPIIP TMSSMYTCMK LLTSNQVDNS 240 SLILPLQFAQ NGFPSRYNNV KVILYNGCCY RLGLRWNNSR KGQVYLTRGW KSLARKNGFR 300 SGTVLKFHVS PADETTMHVQ VLKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.904VK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015940715.1 | 1e-122 | uncharacterized protein LOC107466241 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24700.1 | 6e-07 | B3 family protein |