PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.8P3KF

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 559aa MW: 63382.9 Da PI: 6.9183

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.8P3KF	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	89.6	4.4e-28	48	135	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+eYAk++GF++++++s++sk+++e+++++f Cs++g + e+++ ++r+ ++++t+Cka+++vk++++gkw ++++ +eHnHel p Aradu.8P3KF 48 SFYQEYAKSMGFTTSIKNSRRSKKTKEFIDAKFACSRYGVTPESDSG---SSRRPSVKKTDCKACMHVKRRSEGKWIIHEFIKEHNHELLP 135 5**************************************999888...7788889*****************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.3E-25	48	135	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.273	286	322	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.5E-7	288	321	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.0E-8	297	324	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010018	Biological Process	far-red light signaling pathway
GO:0042753	Biological Process	positive regulation of circadian rhythm
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 559 aa Download sequence Send to blast
MVDALNEVQR SGNAFVIPAK RDAVLFEGDK DLEPHNGIEF ESHEAAYSFY QEYAKSMGFT 60 TSIKNSRRSK KTKEFIDAKF ACSRYGVTPE SDSGSSRRPS VKKTDCKACM HVKRRSEGKW 120 IIHEFIKEHN HELLPALAYH FRIHRNVKLA EKNNIDILHA VSERTRKMYV EMSRQSGGCR 180 NTGSLLGDTN DQFDRGRQLA LDEGDGHFIL EYEEEAIADF DTLHKQPALR SPSPWEKQMS 240 TVYTHAIFKK FQVEVLGVAG CQSRTEPGDG PITKFIVQDY EKDEEFLVTW NELSSDVSCF 300 CRLFEYKGIL CRHALSVLQR CGCSSVPPHY VMKRWTKDAK SREPMADRTQ KVQTRVQRYN 360 DLCKRAIDLS EEGSLSEESY SVVFRTLVDT LKNCVYVNNS NNNGAETSNN SFSVHEAEEN 420 QGTLQLKASK KRGTARKRKV QSDQEVMLVD TQDSLQQMDN LSSDTITLNG YYGTQQSMQG 480 LVRLNLMEPP HDGYYVNQQN MQGLGPLNSM APSHDGFFGT QQSIHGLGGQ LEFRPATSFG 540 YSLQDEPDPL FHGSSSRNT

Sequence ? help Back to Top

Protein Sequence Length: 559 aa Download sequence Send to blast

MVDALNEVQR SGNAFVIPAK RDAVLFEGDK DLEPHNGIEF ESHEAAYSFY QEYAKSMGFT  60
TSIKNSRRSK KTKEFIDAKF ACSRYGVTPE SDSGSSRRPS VKKTDCKACM HVKRRSEGKW  120
IIHEFIKEHN HELLPALAYH FRIHRNVKLA EKNNIDILHA VSERTRKMYV EMSRQSGGCR  180
NTGSLLGDTN DQFDRGRQLA LDEGDGHFIL EYEEEAIADF DTLHKQPALR SPSPWEKQMS  240
TVYTHAIFKK FQVEVLGVAG CQSRTEPGDG PITKFIVQDY EKDEEFLVTW NELSSDVSCF  300
CRLFEYKGIL CRHALSVLQR CGCSSVPPHY VMKRWTKDAK SREPMADRTQ KVQTRVQRYN  360
DLCKRAIDLS EEGSLSEESY SVVFRTLVDT LKNCVYVNNS NNNGAETSNN SFSVHEAEEN  420
QGTLQLKASK KRGTARKRKV QSDQEVMLVD TQDSLQQMDN LSSDTITLNG YYGTQQSMQG  480
LVRLNLMEPP HDGYYVNQQN MQGLGPLNSM APSHDGFFGT QQSIHGLGGQ LEFRPATSFG  540
YSLQDEPDPL FHGSSSRNT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00434	DAP	Transfer from AT4G15090	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.8P3KF

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269\|PubMed:18033885}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015941896.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1 isoform X2
Refseq	XP_025620443.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1 isoform X2
Swissprot	Q9SWG3	1e-137	FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1
TrEMBL	A0A1S3V9I7	0.0	A0A1S3V9I7_VIGRR; protein FAR-RED IMPAIRED RESPONSE 1 isoform X2
STRING	XP_007143097.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	1e-126	FAR1 family protein

Publications ? help Back to Top
Domergue F, et al. Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition. Plant Physiol., 2010. 153(4): p. 1539-54 [PMID:20571114] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]