PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.888CN | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | MYB_related | ||||||||
Protein Properties | Length: 280aa MW: 31154.7 Da PI: 4.7318 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.3 | 1.5e-07 | 7 | 28 | 24 | 46 |
HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqk 46 W+ Ia++++ gRt++++k++w++ Aradu.888CN 7 WSQIAARLP-GRTDNEIKNFWNS 28 *********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.938 | 1 | 34 | IPR017930 | Myb domain |
CDD | cd00167 | 1.42E-5 | 4 | 30 | No hit | No description |
SuperFamily | SSF46689 | 4.81E-7 | 5 | 39 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.0E-10 | 5 | 34 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.3E-5 | 7 | 28 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MSTFNLWSQI AARLPGRTDN EIKNFWNSTV KKRLKLNNNS TSSPNNTDSS EPNSIRDNNV 60 VMGTTTSSNN NGIMHINDHH HHHHQDLMTM SMCMDNSSSS TSSSTMHTHH HAMVFGDPFS 120 MVTNNNNNHY EMATGVAGFH GAMAGDLPLG NSFHGGDYGG MLDEESTDKM GLESDLSLPP 180 LESSIRSTEE IIIINSNNNA SSIDDMKSHN NHFNNNNNTN NDSCFNNTDN QVLNNNNCSN 240 EEDLFGFGNH GQVENLRMGE WDFEGLMQDI SYFPSLDFQV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.888CN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 2e-44 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015936844.1 | 0.0 | transcription factor MYB21-like | ||||
TrEMBL | A0A444Y1I0 | 1e-140 | A0A444Y1I0_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA19G05080.1 | 4e-63 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF774 | 34 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12870.1 | 1e-13 | myb domain protein 46 |