PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.88298

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

TALE

Protein Properties

Length: 460aa MW: 51087.9 Da PI: 6.061

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.88298	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.4	1.4e-09	272	309	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +e+ LA+++gLt +qV +WF N R + Aradu.88298 272 FEHflHPYPKDSEKIMLARQTGLTRNQVANWFINARVR 309 665559******************************88 PP
2	BELL	38.3	3.3e-13	186	218	1	33
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtv 33 erq l +kk+kLl+ll+eVdk+Y+qy++q+q+v Aradu.88298 186 ERQSLLEKKTKLLTLLDEVDKKYRQYCHQMQIV 218 6889999************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	6.4E-11	111	249	IPR006563	POX domain
Pfam	PF07526	6.2E-24	117	219	IPR006563	POX domain
PROSITE profile	PS50071	12.39	250	313	IPR001356	Homeobox domain
SMART	SM00389	2.5E-9	253	317	IPR001356	Homeobox domain
CDD	cd00086	7.78E-13	253	314	No hit	No description
SuperFamily	SSF46689	1.45E-17	254	321	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.4E-28	256	319	IPR009057	Homeodomain-like
Pfam	PF05920	2.0E-17	270	309	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence Send to blast
MYPNQAFSSG SYAEMLSGNP LLSHNYNNNG SVGAPNMVDP ACNSFVGGEQ NVHGQGLSLS 60 LGTSVSSFQY QYDGTTAAAE CMVSLSSGGF HESAKREGLY NSNNSDPCIQ GSFSNGVLNS 120 HYLKAAQELL DEIVGVRKAL LKQPGMEKQE KFNNGIDGGS KDSDGKCNSQ SLQNNVKPPN 180 ELSAEERQSL LEKKTKLLTL LDEVDKKYRQ YCHQMQIVRC LGEQEGIPRL RYVDQQLRQQ 240 KALQQLGVMR QAWRPQRGLP ETSVSILRAW LFEHFLHPYP KDSEKIMLAR QTGLTRNQVA 300 NWFINARVRL WKPMVEEMYK EEFGDSDNIS CNIPSEGIVK RKRDDAEASD NKGEDDSQDN 360 LVTIADSVQQ EGHFHKHTSC SVDENNNNGV YSCGSIMGCS TSPAAYDFAE LGNFTSTMGG 420 HVSLALELRN CERDGFGGMS DNDGIHKKRR NHCVDIFLTL

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence Send to blast

MYPNQAFSSG SYAEMLSGNP LLSHNYNNNG SVGAPNMVDP ACNSFVGGEQ NVHGQGLSLS  60
LGTSVSSFQY QYDGTTAAAE CMVSLSSGGF HESAKREGLY NSNNSDPCIQ GSFSNGVLNS  120
HYLKAAQELL DEIVGVRKAL LKQPGMEKQE KFNNGIDGGS KDSDGKCNSQ SLQNNVKPPN  180
ELSAEERQSL LEKKTKLLTL LDEVDKKYRQ YCHQMQIVRC LGEQEGIPRL RYVDQQLRQQ  240
KALQQLGVMR QAWRPQRGLP ETSVSILRAW LFEHFLHPYP KDSEKIMLAR QTGLTRNQVA  300
NWFINARVRL WKPMVEEMYK EEFGDSDNIS CNIPSEGIVK RKRDDAEASD NKGEDDSQDN  360
LVTIADSVQQ EGHFHKHTSC SVDENNNNGV YSCGSIMGCS TSPAAYDFAE LGNFTSTMGG  420
HVSLALELRN CERDGFGGMS DNDGIHKKRR NHCVDIFLTL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrm_A	2e-17	259	317	5	63	Homeobox protein Meis2
4xrm_B	2e-17	259	317	5	63	Homeobox protein Meis2
4xrs_A	2e-17	259	316	1	58	Homeobox protein Meis1
4xrs_B	2e-17	259	316	1	58	Homeobox protein Meis1
5bng_A	2e-17	259	317	1	59	Homeobox protein Meis2
5bng_B	2e-17	259	317	1	59	Homeobox protein Meis2
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.88298

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025612226.1	0.0	BEL1-like homeodomain protein 7
Refseq	XP_025612227.1	0.0	BEL1-like homeodomain protein 7
Swissprot	Q9FXG8	2e-83	BLH10_ARATH; BEL1-like homeodomain protein 10
TrEMBL	A0A445BR39	0.0	A0A445BR39_ARAHY; Uncharacterized protein
STRING	GLYMA06G03200.1	1e-169	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2146	31	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75410.2	2e-58	BEL1-like homeodomain 3

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]