PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Aradu.83N8C | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 348aa MW: 38629.1 Da PI: 7.1276 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.1 | 1.3e-12 | 197 | 244 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h ++Er+RR+++ ++f L ++P + kK++Ka++L A++Y+k+Lq Aradu.83N8C 197 QDHVIAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYLKQLQ 244 6799************************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.682 | 194 | 243 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.6E-10 | 197 | 244 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.45E-17 | 198 | 261 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.8E-17 | 198 | 257 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.23E-12 | 199 | 248 | No hit | No description |
SMART | SM00353 | 1.7E-14 | 200 | 249 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 348 aa Download sequence Send to blast |
MMQISSTNKY LPEFGMDESV FFHNQYPMMD SSTITSSPSP WPQILDDIDF NQIQESFSSA 60 SSPKSYTSNK RFNSSSAAGT TMPQSSFSPI ERPTKQQKNA YSHGISTNTT TTTSNEFMHS 120 NASSSVASYN HRHQQLYNNN PSSDQGNHVL RPKTESVCSE NLDFATVVSH ADYLSGYDKA 180 NKGSAAAATT RNPTQAQDHV IAERKRREKL SQRFIALSAI VPGLKKMDKA SVLGDAIKYL 240 KQLQEKVKIL EEQVAEKTVE SAIFVKRSIL FAEDNGSSSE ENPDQKIPEI EARISGKDVL 300 IRIHCDKHSG IVPKIINEIE KHDLSVQSSS FLPFGNNSLD ITIVAQRI |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 2e-13 | 198 | 253 | 8 | 63 | Transcription factor MYC2 |
5gnj_B | 2e-13 | 198 | 253 | 8 | 63 | Transcription factor MYC2 |
5gnj_E | 2e-13 | 198 | 253 | 8 | 63 | Transcription factor MYC2 |
5gnj_F | 2e-13 | 198 | 253 | 8 | 63 | Transcription factor MYC2 |
5gnj_G | 2e-13 | 198 | 253 | 8 | 63 | Transcription factor MYC2 |
5gnj_I | 2e-13 | 198 | 253 | 8 | 63 | Transcription factor MYC2 |
5gnj_M | 2e-13 | 198 | 253 | 8 | 63 | Transcription factor MYC2 |
5gnj_N | 2e-13 | 198 | 253 | 8 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 202 | 207 | ERKRRE |
2 | 203 | 208 | RKRREK |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Aradu.83N8C |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015958673.1 | 0.0 | transcription factor bHLH18 isoform X1 | ||||
Refseq | XP_015958688.1 | 0.0 | transcription factor bHLH18 isoform X1 | ||||
TrEMBL | A0A445ESV5 | 0.0 | A0A445ESV5_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA05G23291.1 | 1e-111 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF455 | 34 | 164 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37850.1 | 6e-53 | bHLH family protein |