PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.7SJ8W | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | C3H | ||||||||
Protein Properties | Length: 232aa MW: 26757.7 Da PI: 5.3847 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.8 | 6.7e-07 | 65 | 89 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++rtG+C yG+r +F+H+ Aradu.7SJ8W 65 GEAYCIYYLRTGFCGYGSRYRFNHS 89 7889***************999996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 9.441 | 63 | 91 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-4 | 65 | 89 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MRLECNFRDY IEAYLDEIQQ QISSKESFLF SIPLALVSLC LWNGAVRAIQ RGLGAAEEFY 60 PQRPGEAYCI YYLRTGFCGY GSRYRFNHSC DRADIWFHCV RPMDQYGRLS EGFRSDPASV 120 EWSNDSVICE CFRLLVLLLG LEDKSSWSQL ASLYARMCSV VYLIQIPKQL SLTLLTWLTN 180 SDPRSQPLRF LCPGTKLLSD VFLSLSFDED LGMSKKKDER EGVTINSWID RV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.7SJ8W |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.2 | 1e-11 | C3H family protein |