PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.7F0D8
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 515aa    MW: 58547.4 Da    PI: 10.3333
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.7F0D8genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.32.5e-17241325195
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                  f+k +++s+v +  +l lp +f+++h  k+ +   ++lede+g+++e  +i ++++    l++GW++F+ +++L++gD +vF+l+++++f    k
  Aradu.7F0D8 241 FIKSMVRSHVYSCFWLGLPLRFCAKHLPKTVC--NMILEDETGKEFEAVFIGNRSG----LSGGWRGFALEHKLDDGDALVFELTEKTRF----K 325
                  89************************666667..6***************555554....9**********************9875555....3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.5E-19233330IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.26E-21234329IPR015300DNA-binding pseudobarrel domain
CDDcd100171.12E-21239327No hitNo description
SMARTSM010195.2E-19241335IPR003340B3 DNA binding domain
PROSITE profilePS5086311.674241332IPR003340B3 DNA binding domain
PfamPF023623.2E-15241325IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MMRYRHKNVV VFRISTKIMI VKKSLLTGSC QRYQCHRRRS EHHHLFDSLF SLFITPTVLP  60
SFVVVVSSHL SLEVDDSDAA LYSSLQAKAN ASSFSSLSPY HQQMAKGCTN NDYEEARKQR  120
LEENKKRFED LGISTISKNL SEIASSVKKS PYRSPKPKSK RDVVVEPRRS SRVRNPVRTY  180
REDVDIELPT FRKRSRSSSS WGSYIARPLD EIKEATDEQR ARALEAAEKL QSNLQSENPS  240
FIKSMVRSHV YSCFWLGLPL RFCAKHLPKT VCNMILEDET GKEFEAVFIG NRSGLSGGWR  300
GFALEHKLDD GDALVFELTE KTRFKIYRIK AFPDSAEEYE KQILKEEGNK RAKKAPKANS  360
NSESEFNKTK NPKKAIADKT NEVESSKDNL PESNIDTEVK PQEVKLSYRT RFTRKKVQDK  420
SKGGTQVENG ESKEAMKPKS QGNKTKKSKE SVDHKIDNSD NTQQVLSKNN PVGPKGASLS  480
NEDGIVQDGG PVEEKSKSVS KPRKMRAPKL FRKRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.7F0D8
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015931736.10.0B3 domain-containing protein Os05g0481400 isoform X1
RefseqXP_029143754.10.0B3 domain-containing protein Os05g0481400
TrEMBLA0A445C7K90.0A0A445C7K9_ARAHY; Uncharacterized protein
STRINGGLYMA02G40400.31e-150(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF124332328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.15e-53B3 family protein