PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Aradu.7244H | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 181aa MW: 20135.7 Da PI: 5.1967 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 139.7 | 9.8e-44 | 6 | 105 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +Ca+Ck+lrr+C+k+C++apyfp+++p+kfa+vhk+FGasnv+k+l++lp ++r da+sslvyeA ar+rdPvyG+vg i+ lq+q+ ql+ +la+++ Aradu.7244H 6 PCASCKLLRRRCTKECIFAPYFPSDDPRKFAIVHKVFGASNVSKMLQELPIDQRGDAVSSLVYEATARVRDPVYGCVGAISYLQNQVTQLQMQLAVAQ 103 7***********************************************************************************************99 PP DUF260 99 ee 100 +e Aradu.7244H 104 AE 105 87 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.568 | 5 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.8E-43 | 6 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 181 aa Download sequence Send to blast |
MGGSSPCASC KLLRRRCTKE CIFAPYFPSD DPRKFAIVHK VFGASNVSKM LQELPIDQRG 60 DAVSSLVYEA TARVRDPVYG CVGAISYLQN QVTQLQMQLA VAQAEILSIH QMQQDPSNNN 120 TTLLPSQLLD QDYSEKFLLL SSAENNNNYD FLPQYLSFAS SSSSSSNVFQ DSEPLKRESF 180 C |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-48 | 2 | 107 | 7 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-48 | 2 | 107 | 7 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Aradu.7244H |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 3e-48 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015950199.1 | 1e-132 | LOB domain-containing protein 12-like | ||||
Refseq | XP_025626482.1 | 1e-132 | LOB domain-containing protein 12 | ||||
Refseq | XP_025691975.1 | 1e-132 | LOB domain-containing protein 12 | ||||
Swissprot | Q8LBW3 | 3e-69 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A445EVT3 | 1e-130 | A0A445EVT3_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA11G29450.1 | 1e-87 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1664 | 34 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G30130.1 | 4e-71 | LBD family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|