PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.6YH3X
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family LFY
Protein Properties Length: 268aa    MW: 30773.1 Da    PI: 8.052
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.6YH3XgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY141.59.4e-44101251136
      FLO_LFY   1 mdpeafsaslfkwdpraaaaapparlleeaavseapleaaaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdeelddlmkslseifr 98 
                  m p+af+++lfkwdpr++  + +++l                  ++ + +leelf+ayGvry+t+ak+aelGft+ tLvdmk+eel+++m+sls+ifr
  Aradu.6YH3X  10 MGPDAFTSTLFKWDPRTILPTCSSSL------------------MEGTGGLEELFHAYGVRYYTAAKVAELGFTARTLVDMKEEELEHMMNSLSQIFR 89 
                  78999999999999987652222111..................223579************************************************ PP

      FLO_LFY  99 ldllvGeryGikaavraerrrleeeeaekkrrkllsed 136
                  +dllvGeryGikaavraerrr+++++  + r   ls++
  Aradu.6YH3X  90 WDLLVGERYGIKAAVRAERRRIQDHH--QLRIDSLSQE 125
                  ***********************965..4444444333 PP
2FLO_LFY257.94.1e-79138268236367
      FLO_LFY 236 tepgevargkknGLDYLfdLyeqCrefLlqvqkiakerGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenv 333
                   +pgevargkknGLDYLf+LyeqCr+fL+qvq+iake+ e c  +vtnqvfr+akkaga  inkPkmrhYvhCYalhcLd+++sn+lrr+fke g nv
  Aradu.6YH3X 138 WDPGEVARGKKNGLDYLFHLYEQCRDFLIQVQHIAKEH-EVCTVQVTNQVFRFAKKAGAHCINKPKMRHYVHCYALHCLDKDTSNQLRRQFKETGQNV 234
                  58**********************************98.99********************************************************* PP

      FLO_LFY 334 GawrqacykplvaiaarqgwdidavfnahprLsi 367
                  Gawrqacy+plvaiaa + +did++fn+hp Lsi
  Aradu.6YH3X 235 GAWRQACYNPLVAIAALHHHDIDSIFNSHPCLSI 268
                  *******************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016986.7E-4210130IPR002910Floricaula/leafy protein
PfamPF016982.7E-75139268IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MYVVLGDRKM GPDAFTSTLF KWDPRTILPT CSSSLMEGTG GLEELFHAYG VRYYTAAKVA  60
ELGFTARTLV DMKEEELEHM MNSLSQIFRW DLLVGERYGI KAAVRAERRR IQDHHQLRID  120
SLSQEGVQQH KEAVGSTWDP GEVARGKKNG LDYLFHLYEQ CRDFLIQVQH IAKEHEVCTV  180
QVTNQVFRFA KKAGAHCINK PKMRHYVHCY ALHCLDKDTS NQLRRQFKET GQNVGAWRQA  240
CYNPLVAIAA LHHHDIDSIF NSHPCLSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2vy1_A1e-671262682145PROTEIN LEAFY
2vy2_A1e-671262682145PROTEIN LEAFY
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.6YH3X
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015955680.20.0protein UNIFOLIATA-like
SwissprotO040641e-123FLLH_POPTR; Floricaula/leafy homolog
TrEMBLA0A445DT540.0A0A445DT54_ARAHY; Uncharacterized protein
STRINGGLYMA04G37900.21e-126(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80333346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.13e-68floral meristem identity control protein LEAFY (LFY)
Publications ? help Back to Top
  1. Tuskan GA, et al.
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).
    Science, 2006. 313(5793): p. 1596-604
    [PMID:16973872]