PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.6MF1G | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | TCP | ||||||||
Protein Properties | Length: 393aa MW: 43928 Da PI: 8.9639 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 156.5 | 1.5e-48 | 42 | 205 | 1 | 137 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa..............sec...eaesssss 81 +a+kkdrhskihT++g+RdRRvRls+e+a++fFdLqd+LGfdk+s+t+eWLl+++k+aikel+++++ss+ s + Aradu.6MF1G 42 PAPKKDRHSKIHTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLEWLLTKSKRAIKELARSKNSSSgnnnggvannsfssS-SsdgA------- 131 589**************************************************************55555433333332211111.11221....... PP TCP 82 asnsssg........................kaaksaakskksqksaasalnlakesrakarararertrekmriknkln 137 + + + +++q+++++ ++++kesr+karararert++km++++k + Aradu.6MF1G 132 ------DddevdsvinqqqltdnidgtheqgGVDSLERRLRRDQQKEEESRAKMKESREKARARARERTSSKMCNSEKVQ 205 ......02233344444444566888888764444444667777777778*************************98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.7E-44 | 44 | 200 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 36.324 | 45 | 103 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 11.188 | 180 | 197 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 393 aa Download sequence Send to blast |
MTNLAVADAM FKQEYFTAAA AGGSSHHHHH HYGMSSLITK RPAPKKDRHS KIHTSQGLRD 60 RRVRLSIEIA RKFFDLQDML GFDKASNTLE WLLTKSKRAI KELARSKNSS SGNNNGGVAN 120 NSFSSSSSDG ADDDEVDSVI NQQQLTDNID GTHEQGGVDS LERRLRRDQQ KEEESRAKMK 180 ESREKARARA RERTSSKMCN SEKVQDLKKK SPAMVMEEDP QILMQHQQLR APMIQPLEES 240 SMRSSPKLFQ PHHLAAAAGG GGGGGSSEVP RDDFNVIEES IVIRRKLKQS LMSSSSSSSN 300 NNHHQNHNVI PKEATNFNNN NSDYHCFPNL SSPNWEANAS AATNNGRSNV CTISSMNLST 360 MFCFLLLFFY FSIFLLGLQI FGKSWEECTN PHL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.6MF1G |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 6e-54 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015962257.1 | 0.0 | transcription factor DICHOTOMA-like | ||||
Refseq | XP_025696948.1 | 0.0 | transcription factor DICHOTOMA | ||||
TrEMBL | A0A444WNB9 | 0.0 | A0A444WNB9_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA13G07475.1 | 1e-102 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1738 | 32 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67260.2 | 5e-27 | TCP family protein |