PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.6M9JS

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

TCP

Protein Properties

Length: 456aa MW: 46997.6 Da PI: 7.0969

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.6M9JS	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	131.5	8e-41	42	156	2	101
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.......... 88 ++ k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ ++s +ss+s+ s++ Aradu.6M9JS 42 TAPKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSLRSSGSTLSAPpsksaphtfh 139 5679*****************************************************************99988888888888555554444444444 PP TCP 89 ..........kaaksaakskksq 101 + +++ Aradu.6M9JS 140 aaalalahhhP------SYEEAF 156 44432222220......222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.1E-39	47	171	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.496	48	102	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001047	Molecular Function	core promoter binding

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence Send to blast
MGGSMSSSTS SSSSSSNSTS SSTTIDANLA IATRSDDNQL QTAPKRSTKD RHTKVDGRGR 60 RIRMPATCAA RVFQLTRELG HKSDGETIEW LLQQAEPAII AATGTGTIPA NFSTLNVSLR 120 SSGSTLSAPP SKSAPHTFHA AALALAHHHP SYEEAFHQHT ALLGFHPHHA QHQHLMTADQ 180 IAEALPGGAA DSSENYMRKR FREDLFKDES NHPSESQNNE SGGAGAAAAD GSSPKPFKTN 240 LQMQLQQQQP QPEGGGGGGG GGGSSGHGLL RQSNLVPATA MWAVAPAPAT AGAPGSTIWM 300 LPVTAGGAGG VATGAAASEA QMWPFAHQGG GGGGGGGGGG NNTLQGPLHL MPRFNLSPSG 360 GVEFQQEGRG GLQLGSMVMP AAQQQQQPPS QHLGLTMSES NLGMLAALNA YTRAGLNMNM 420 NMNINSSSSH HHHHQHQPPP PPQAADSGED GPNSSQ

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence Send to blast

MGGSMSSSTS SSSSSSNSTS SSTTIDANLA IATRSDDNQL QTAPKRSTKD RHTKVDGRGR  60
RIRMPATCAA RVFQLTRELG HKSDGETIEW LLQQAEPAII AATGTGTIPA NFSTLNVSLR  120
SSGSTLSAPP SKSAPHTFHA AALALAHHHP SYEEAFHQHT ALLGFHPHHA QHQHLMTADQ  180
IAEALPGGAA DSSENYMRKR FREDLFKDES NHPSESQNNE SGGAGAAAAD GSSPKPFKTN  240
LQMQLQQQQP QPEGGGGGGG GGGSSGHGLL RQSNLVPATA MWAVAPAPAT AGAPGSTIWM  300
LPVTAGGAGG VATGAAASEA QMWPFAHQGG GGGGGGGGGG NNTLQGPLHL MPRFNLSPSG  360
GVEFQQEGRG GLQLGSMVMP AAQQQQQPPS QHLGLTMSES NLGMLAALNA YTRAGLNMNM  420
NMNINSSSSH HHHHQHQPPP PPQAADSGED GPNSSQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.6M9JS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015958806.1	0.0	transcription factor TCP8
Refseq	XP_015958807.1	0.0	transcription factor TCP8
TrEMBL	A0A444ZC14	0.0	A0A444ZC14_ARAHY; Uncharacterized protein
STRING	EOX97160	1e-145	(Theobroma cacao)
STRING	GLYMA16G00580.1	1e-146	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6077	30	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	8e-58	TCP family protein