PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.6LK51
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family TALE
Protein Properties Length: 373aa    MW: 42513.5 Da    PI: 6.4202
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.6LK51genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.81.6e-073123442254
                  SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                   +yp++e++++L +++gL+ +q+ +WF N+R +
  Aradu.6LK51 312 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 344
                  59*****************************87 PP
2ELK292.4e-10265286122
          ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                  ELKh+L+++Y+++++++++E++
  Aradu.6LK51 265 ELKHELKQGYKEKIVDIREEIL 286
                  9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.5E-1894138IPR005540KNOX1
PfamPF037902.4E-1796137IPR005540KNOX1
SMARTSM012567.4E-26146201IPR005541KNOX2
PfamPF037911.8E-19150200IPR005541KNOX2
PROSITE profilePS512139.969265285IPR005539ELK domain
PfamPF037898.4E-7265286IPR005539ELK domain
SMARTSM011886.1E-4265286IPR005539ELK domain
PROSITE profilePS5007111.612285348IPR001356Homeobox domain
SuperFamilySSF466891.07E-15287352IPR009057Homeodomain-like
SMARTSM003891.2E-10287352IPR001356Homeobox domain
CDDcd000862.45E-10288349No hitNo description
Gene3DG3DSA:1.10.10.607.7E-25292349IPR009057Homeodomain-like
PfamPF059201.0E-17305344IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MAFHEHHMQH EIAFQRFTEE QELTAENRDM QQQRAAGVVA PPTWLNNPSS HHHRQQQNFL  60
HQLQPPPPPP PETATTTEKS MDRNTSFESS DELREYKADI LGHPLYDQLL SAHVSCLRIA  120
TPVDQLPRID AQLQQSQRVV DKYSALANPV VDDKELDHFM THYVLLLCAF KEQLQQHVRV  180
HAMEAVMACW DLEQSLQSLT GVSPGEGTGA TMSDDEDEQA ESNGGGGGGG GNLYEGSFDG  240
VDSLGFGPLV PTESERSLME RVRHELKHEL KQGYKEKIVD IREEILRKRR AGKLPGDTTS  300
LLKAWWQSHS KWPYPTEEDK ARLVQETGLQ LKQINNWFIN QRKRNWHTNP SSSSNSKTKR  360
KSTIQTISWV KIF
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.6LK51
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015932448.10.0homeobox protein knotted-1-like 4 isoform X1
RefseqXP_025607729.10.0homeobox protein knotted-1-like 4 isoform X1
SwissprotP480001e-159KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A445EMT10.0A0A445EMT1_ARAHY; Uncharacterized protein
STRINGXP_007155117.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-155KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]