PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.6L1EK
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 400aa    MW: 44532.9 Da    PI: 6.1973
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.6L1EKgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.92e-14196242455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  Aradu.6L1EK 196 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 242
                  7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.625192241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-20194265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.38E-15196246No hitNo description
Gene3DG3DSA:4.10.280.101.2E-19196261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-12196241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-17198247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MQLEMSEDIR VGSPNDGSNN LDSNFHLLAV TEADNQSGQV DSYRVDPTQR WDPIQSPLDQ  60
LQVQLPVFSP IEDQILTQED DHYSQTVSSI LQNQSTRWVD SPSIACYVTC SNQSAFAKWT  120
SLVADEHLHA ATVDGSSQWL LKYILFTVPY LHSNKNNEEN NSSPNNTNPT SSAGPSDRLR  180
GGGKGSGTPQ DELSANHVLA ERRRREKLNE RFIILRSLVP FVTKMDKASI LGDTIEYVKQ  240
LRRKIQDLEA HIRQMEAEQQ RSRTPSTTIE VHHCGSSNKE QQQHTVVVGH EKRKVRIVEG  300
TKTATKVVAA AATEASVQVS IIESDALLEL ECSHREGLLL DVMLVLREMK IEVIGVQSSL  360
NNGVFVAELR AKVKDNNSGK KVSIVEVKRA LNQVIPHTGD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-14196245857Transcription factor MYC2
5gnj_B1e-14196245857Transcription factor MYC2
5gnj_E1e-14196245857Transcription factor MYC2
5gnj_F1e-14196245857Transcription factor MYC2
5gnj_G1e-14196245857Transcription factor MYC2
5gnj_I1e-14196245857Transcription factor MYC2
5gnj_M1e-14196245857Transcription factor MYC2
5gnj_N1e-14196245857Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200205ERRRRE
2201206RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.6L1EK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015950930.10.0LOW QUALITY PROTEIN: basic helix-loop-helix protein A-like
SwissprotE3SXU41e-158BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A445E6050.0A0A445E605_ARAHY; Uncharacterized protein
STRINGGLYMA02G16670.21e-161(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36373249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.18e-58bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]