PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.6JX2C
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 183aa    MW: 21117.3 Da    PI: 10.5055
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.6JX2CgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.91.4e-1613901191
                 HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91
                 ++++r+ +p+kf ++hg+    s  + l+ ++g  W+v+   +k+s+++++ kGWkeF k   L+eg  vvFk++++s+f 
  Aradu.6JX2C 13 TNLQRIKIPNKFSRRHGSA--LSNPVFLKPPDGTLWKVYW-TKKNSDEVWFVKGWKEFTKNYSLNEGHLVVFKYEETSQFD 90
                 456899**********966..7778***************.5889999**************************9988884 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.704397IPR003340B3 DNA binding domain
CDDcd100171.69E-16494No hitNo description
SuperFamilySSF1019366.08E-20596IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-20695IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.1E-13697IPR003340B3 DNA binding domain
PfamPF023624.8E-141391IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MLHFRFFKAI LKTNLQRIKI PNKFSRRHGS ALSNPVFLKP PDGTLWKVYW TKKNSDEVWF  60
VKGWKEFTKN YSLNEGHLVV FKYEETSQFD VIILEINDLE RVGAFVLYCC ECVFGATESR  120
RCIQIQAFNK HIHPRNFNKH IHNTVTARSA EQSRLQRRTG ANLVQAGGET KRMTAGGWGL  180
GAG
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.6JX2C
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016169473.18e-67B3 domain-containing transcription factor VRN1-like
RefseqXP_025674133.18e-67B3 domain-containing transcription factor VRN1
TrEMBLA0A444Y1L54e-63A0A444Y1L5_ARAHY; Uncharacterized protein
STRINGAES707032e-36(Medicago truncatula)
STRINGAES858332e-36(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.17e-17B3 family protein