PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.66DGF | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 209aa MW: 24249.7 Da PI: 10.1467 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 76.9 | 1.5e-24 | 12 | 62 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ie + rq tfskR+ gi+KKA+ELS+LCda+ a+i+fs++gkl++++s Aradu.66DGF 12 KKIEKNASRQATFSKRKRGIFKKAKELSTLCDADLALIVFSPSGKLFDFAS 62 689*********************************************986 PP | |||||||
2 | K-box | 38 | 7e-14 | 81 | 172 | 9 | 97 |
K-box 9 leeakaeslqqelakLkkeienLq...reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 +++++ + q e + + ++L +Rhl Ge+L+ L++ eLq+Le+ Lek+l ++ + K++ l+ i e++k+ ++ ++n++L+k+ Aradu.66DGF 81 SQDQQSHEFQLEKDTYYLKCKELTdktIGLRHLNGEELQGLKIHELQKLERVLEKGLARVSKEKDQRNLKDIIEMKKRGLQMVQDNHRLKKM 172 455556666666666666666666544567**********************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.6E-33 | 4 | 63 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 27.277 | 4 | 64 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.62E-33 | 6 | 73 | No hit | No description |
PRINTS | PR00404 | 4.1E-23 | 6 | 26 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.66E-29 | 6 | 90 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.8E-24 | 13 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.1E-23 | 26 | 41 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.1E-23 | 41 | 62 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.8E-10 | 87 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 8.977 | 89 | 179 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MTKMSKQKME IKKIEKNASR QATFSKRKRG IFKKAKELST LCDADLALIV FSPSGKLFDF 60 ASSSVQEVTE RYHMQTSIYR SQDQQSHEFQ LEKDTYYLKC KELTDKTIGL RHLNGEELQG 120 LKIHELQKLE RVLEKGLARV SKEKDQRNLK DIIEMKKRGL QMVQDNHRLK KMRSQANSQG 180 QSSKSNSVEE SDNRDHDAPN LNLGLPMFE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 4e-16 | 4 | 72 | 1 | 69 | MEF2 CHIMERA |
6byy_B | 4e-16 | 4 | 72 | 1 | 69 | MEF2 CHIMERA |
6byy_C | 4e-16 | 4 | 72 | 1 | 69 | MEF2 CHIMERA |
6byy_D | 4e-16 | 4 | 72 | 1 | 69 | MEF2 CHIMERA |
6bz1_A | 4e-16 | 4 | 72 | 1 | 69 | MEF2 CHIMERA |
6bz1_B | 4e-16 | 4 | 72 | 1 | 69 | MEF2 CHIMERA |
6bz1_C | 4e-16 | 4 | 72 | 1 | 69 | MEF2 CHIMERA |
6bz1_D | 4e-16 | 4 | 72 | 1 | 69 | MEF2 CHIMERA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.66DGF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015943294.1 | 1e-150 | MADS-box protein SVP-like isoform X2 | ||||
Refseq | XP_020988231.1 | 1e-150 | MADS-box protein SVP-like isoform X2 | ||||
Refseq | XP_025625822.1 | 1e-150 | MADS-box protein SVP | ||||
TrEMBL | A0A445BAP6 | 1e-149 | A0A445BAP6_ARAHY; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 3e-54 | MIKC_MADS family protein |