PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.630QE | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | FAR1 | ||||||||
Protein Properties | Length: 98aa MW: 11391.3 Da PI: 10.4208 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 41.8 | 3.6e-13 | 23 | 82 | 34 | 91 |
FAR1 34 vCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 + +gkr+++ ++++r++++ trtgC+a+++v ++ ++ w+v+kl+++HnH+l+p Aradu.630QE 23 EHNAKGKRAKKYIFnSNRKREHKVLTRTGCEAMITVYFDSkTSAWRVEKLVEKHNHDLVP 82 4455555555543357899999***************99989***************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.3E-11 | 20 | 82 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 98 aa Download sequence Send to blast |
MCVMRGVSGS ESARVIHRME KMEHNAKGKR AKKYIFNSNR KREHKVLTRT GCEAMITVYF 60 DSKTSAWRVE KLVEKHNHDL VPQCLVYLIS NHRGMTEA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.630QE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016195882.1 | 2e-38 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_025647956.1 | 2e-38 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A445AQ13 | 3e-42 | A0A445AQ13_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF17979 | 2 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 3e-06 | FAR1-related sequence 5 |