PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.6308V

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 379aa MW: 43164.8 Da PI: 7.8735

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.6308V	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	26.6	1.9e-08	72	143	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 kfY++YAk +GFs+r+++++++ +ei+++ +Cs+e k +++ + +++t+ +a g w ++k++l+H+H+++ Aradu.6308V 72 KFYRNYAKATGFSTRVRSTNRK--GNEIKNQLITCSREKKWKSKISP---------TEKTNPTAD-------VGAWIISKVVLDHSHPCC 143 6**************98887..8889********998887665.........444444443.......356777777777777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.5E-6	72	144	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.186	312	348	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	9.0E-5	314	345	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.0E-4	323	350	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MDDSTSDCQL NPGEVDDEFE SNEVPEQTLG CIISDMIGRF LTWCILQPFS VVDDQLVPKV 60 GMTFTTLEDA GKFYRNYAKA TGFSTRVRST NRKGNEIKNQ LITCSREKKW KSKISPTEKT 120 NPTADVGAWI ISKVVLDHSH PCCPSKAEML KQHREVSMSI RRTIENNEEA GIRPSKTYQS 180 FVAATGDRHI WVTIYLDHHF WAGMRSTQSS ESMHSFFNKF INRNNSLIQF IKQYDNCLGS 240 REQAERESDA ADFHTVIPCA TKSSIEAQFQ DVEVQAQFRG KANCITRLTN SALGYSVYEV 300 GEQVSSLIFN KFVVTYDSVA AEVKCQCLLF ESRGILCRHA LSVLSFEQVS QVSPRYILER 360 WSKKVKRRHT HIKSSHDSH

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MDDSTSDCQL NPGEVDDEFE SNEVPEQTLG CIISDMIGRF LTWCILQPFS VVDDQLVPKV  60
GMTFTTLEDA GKFYRNYAKA TGFSTRVRST NRKGNEIKNQ LITCSREKKW KSKISPTEKT  120
NPTADVGAWI ISKVVLDHSH PCCPSKAEML KQHREVSMSI RRTIENNEEA GIRPSKTYQS  180
FVAATGDRHI WVTIYLDHHF WAGMRSTQSS ESMHSFFNKF INRNNSLIQF IKQYDNCLGS  240
REQAERESDA ADFHTVIPCA TKSSIEAQFQ DVEVQAQFRG KANCITRLTN SALGYSVYEV  300
GEQVSSLIFN KFVVTYDSVA AEVKCQCLLF ESRGILCRHA LSVLSFEQVS QVSPRYILER  360
WSKKVKRRHT HIKSSHDSH

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.6308V

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	1e-133	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020981527.1	1e-126	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A444X817	0.0	A0A444X817_ARAHY; Uncharacterized protein
TrEMBL	A0A445AF03	0.0	A0A445AF03_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	2e-26	far-red elongated hypocotyls 3