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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Aradu.61MYT | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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| Family | Whirly | ||||||||
| Protein Properties | Length: 119aa MW: 13946.4 Da PI: 11.6053 | ||||||||
| Description | Whirly family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Whirly | 30.8 | 5.3e-10 | 69 | 113 | 50 | 95 |
Whirly 50 ekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalk 95
e+ ++f+ls e+++++ l+++esc+ffhd +++ + k++k ++
Aradu.61MYT 69 ENDEVFSLSMGEMGTVI-LGARESCKFFHDRIKGKRSNTKLKKIFS 113
68899*********988.9************************986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:2.30.31.10 | 6.5E-5 | 70 | 112 | IPR009044 | ssDNA-binding transcriptional regulator |
| Pfam | PF08536 | 5.6E-7 | 70 | 113 | IPR013742 | Plant transcription factor |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 119 aa Download sequence Send to blast |
MFNILRKNTS LLTHTLKTFF IILHRASNPN PRTSSRFQPL LRCSLHRRSL RLKASVILNI 60 SWFQKRLNEN DEVFSLSMGE MGTVILGARE SCKFFHDRIK GKRSNTKLKK IFSEHLCEI |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Aradu.61MYT |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G14410.1 | 4e-10 | ssDNA-binding transcriptional regulator | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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