PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.60VET | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | B3 | ||||||||
Protein Properties | Length: 234aa MW: 26415.2 Da PI: 9.1353 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 63.1 | 4.4e-20 | 106 | 195 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 f+k l++s+v + ++ lp f+++h + +++t+tlede g+++++k+i +k++ l++GW++F ++L+egD++vF+l++ +f ++ ++r Aradu.60VET 106 FVKSLVRSHVASCFWMGLPVAFCKKHLAD--KDTTMTLEDEYGKEYKMKYIACKTG----LSAGWRQFSAVHKLQEGDVLVFQLVEPAKF--KIYIVR 195 89************************656..5679***************777776....***********************9875555..777666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.5E-21 | 98 | 197 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.49E-24 | 99 | 197 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.96E-27 | 104 | 195 | No hit | No description |
PROSITE profile | PS50863 | 13.507 | 106 | 197 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.7E-17 | 106 | 195 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.0E-24 | 106 | 197 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MVDRMVKKEV EQHDEQTVTL GFYGDEQAQR RFSINMMDKQ NKATDNKNKV LNSDIKPVTN 60 GEAQKFASSM KATTAEATSS RGEAKSSAVI RAEEIRSSLQ GEYPSFVKSL VRSHVASCFW 120 MGLPVAFCKK HLADKDTTMT LEDEYGKEYK MKYIACKTGL SAGWRQFSAV HKLQEGDVLV 180 FQLVEPAKFK IYIVRADNLR EVDGALSLMN LDSYARQKQR GKPCFVSPCF GFLH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.60VET |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_029144684.1 | 1e-177 | B3 domain-containing protein At5g42700 | ||||
TrEMBL | A0A445ETL6 | 1e-160 | A0A445ETL6_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA17G20175.1 | 5e-91 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1007 | 33 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 6e-37 | B3 family protein |