PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Aradu.5Z56U | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 211aa MW: 23093.1 Da PI: 5.191 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 135.3 | 2.3e-42 | 32 | 131 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+Ca++Cvlapyfp ++p+kf +h++FGasn++k+l++lpe++r da++s+vyeA ar+rdPvyG++g i +lq q+++l+a+la+++ Aradu.5Z56U 32 PCAACKILRRRCAEKCVLAPYFPPTEPAKFTTAHRVFGASNIIKFLQELPESQRADAVTSMVYEAGARIRDPVYGCAGAICQLQTQVNELQAQLAKAQ 129 7***********************************************************************************************99 PP DUF260 99 ee 100 +e Aradu.5Z56U 130 AE 131 87 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.219 | 31 | 132 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.0E-42 | 32 | 129 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 211 aa Download sequence Send to blast |
MEASDTNTPI SSSQSPTSSS SLPPPPQVIM SPCAACKILR RRCAEKCVLA PYFPPTEPAK 60 FTTAHRVFGA SNIIKFLQEL PESQRADAVT SMVYEAGARI RDPVYGCAGA ICQLQTQVNE 120 LQAQLAKAQA EIANMQFQQA NMVALLYMQM AEANNKATAT TQEPPPSPQQ SVDNFIASPP 180 HINNNLNFFD DNNTSLNSMW ELFGHDHITT F |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-41 | 31 | 132 | 10 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-41 | 31 | 132 | 10 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Aradu.5Z56U |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015935738.1 | 1e-156 | LOB domain-containing protein 1-like | ||||
Swissprot | Q9SK08 | 2e-74 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | A0A445BVT9 | 1e-126 | A0A445BVT9_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA13G40370.2 | 1e-102 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1303 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G07900.1 | 4e-63 | LOB domain-containing protein 1 |