PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.5WY8M
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 458aa    MW: 52900.6 Da    PI: 7.396
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.5WY8MgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR154.83.2e-1751137191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r+++++++   +ei+++  +Cs+e k +++ +    +++t+++  ++C a++ ++  k  g w ++k++l+H+H+ +p
  Aradu.5WY8M  51 KFYRNYAKAAGFSTRVRSTNRK--GNEIKNQLITCSREEKWKSKISP---TEKTNPTAGINCPARIYIHTLKdVGAWIISKVVLDHSHPYCP 137
                  6****************98887..8889***********99998776...8999**************998879**************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-1451137IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MDDSTSDCQL NLGEVDYEFE SNEVPAPLSV VDDQFVPKVG MTFTTLEDAE KFYRNYAKAA  60
GFSTRVRSTN RKGNEIKNQL ITCSREEKWK SKISPTEKTN PTAGINCPAR IYIHTLKDVG  120
AWIISKVVLD HSHPYCPSKA DMLKQHRELS MSIRRTIENN EEADLYENRH IWVPIYLDHH  180
FWAGMRSTQR SESMHSFFNK FITRNSSLIQ FIKQYDNCLG SREQAERESD AADFHTVIPC  240
ATKSSIEAQF QDVYTHQKFR EVQAQFRGKA NCITRLTNSA LGYSVYEVGE QVSSSIFNKF  300
VVTYDSVAAE VKFQYLLFES RGILCRHALS VLSFEQVSQV SPRYILERWS KKVKRRHTHI  360
KSSHKEPLME PRSKRFDQLV FCSQNICEFA SESEELIAIL HRAYDNVMAE MESLKTKRKE  420
TSSLSHEDAN LEKTPTWNPL TSFRALQGFE QEDVQKIG
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.5WY8M
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020997233.11e-178protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A445BGR80.0A0A445BGR8_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.26e-31far-red elongated hypocotyls 3