PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Aradu.5RF5F | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
||||||||
Family | CO-like | ||||||||
Protein Properties | Length: 327aa MW: 35690.8 Da PI: 6.9581 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 24.4 | 6e-08 | 4 | 47 | 4 | 41 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 + C+ +++ ++ +C+ + +lC C ++ H H +v+ Aradu.5RF5F 4 KLCDSCKSASATVYCRPDAAFLCSPCDSKVHAAnklasrHPRVS 47 68*****************************6567777787776 PP | |||||||
2 | zf-B_box | 23.6 | 1.1e-07 | 47 | 91 | 4 | 42 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ +e+ +++ C+ + lC C +H+ H+++p+ Aradu.5RF5F 47 SLCEVCEQAPAHVTCKADAASLCLACDRDIHSAnplasrHERIPV 91 68*****************************66899999998885 PP | |||||||
3 | CCT | 70 | 6.2e-24 | 270 | 313 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ Aradu.5RF5F 270 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 313 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.651 | 1 | 48 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.2E-13 | 1 | 48 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.1E-6 | 4 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.15E-8 | 5 | 48 | No hit | No description |
PROSITE profile | PS50119 | 10.452 | 44 | 91 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.5E-6 | 47 | 91 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.32E-7 | 48 | 91 | No hit | No description |
SMART | SM00336 | 3.0E-9 | 49 | 91 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 4.8E-18 | 270 | 312 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.787 | 270 | 312 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 327 aa Download sequence Send to blast |
MASKLCDSCK SASATVYCRP DAAFLCSPCD SKVHAANKLA SRHPRVSLCE VCEQAPAHVT 60 CKADAASLCL ACDRDIHSAN PLASRHERIP VTPFYHSLAA TVKSPVNFLD DHRFFSDADA 120 DADVDVSTEE AEAASWLLPT PSNPSKADLN SSQYIFQEME QVPYVDLDYG NVDPKSEPKS 180 SATTDGVVPV QSKTANEHYF EPFAYGGYKY NSQSQSQSQM SHSVSSSSMD VGVVPDGNAM 240 SEISTCKVAS SVEGGNQAVT VTAQFSAADR EARVLRYREK RKNRKFEKTI RYASRKAYAE 300 TRPRIKGRFA KRTEVDPLNG YGVVPSC |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Aradu.5RF5F |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015945478.1 | 0.0 | zinc finger protein CONSTANS-LIKE 4 | ||||
Refseq | XP_025623650.1 | 0.0 | zinc finger protein CONSTANS-LIKE 4 | ||||
Swissprot | Q940T9 | 1e-113 | COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4 | ||||
TrEMBL | A0A445B4S8 | 0.0 | A0A445B4S8_ARAHY; Uncharacterized protein | ||||
STRING | XP_007136923.1 | 1e-168 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1302 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G24930.1 | 1e-108 | CONSTANS-like 4 |