PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.5F7WV

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

WOX

Protein Properties

Length: 420aa MW: 46706.3 Da PI: 7.466

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.5F7WV	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.7	8.5e-18	52	112	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++++eq+++Le+ F++ +p ++e++++ ++l ++ +++V++WFqNr+ + k+ Aradu.5F7WV 52 KPRWNPKPEQIRILEAIFNSgMVNPPRDEIRKIRMQLqeygQVGDANVFYWFQNRKSRSKH 112 89***************99***********************************995 PP
2	Wus_type_Homeobox	112	3.1e-36	51	113	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +++RW+P+peQi+iLe++++sG+++P+++ei++i+++L+eyG+++d+NVfyWFQNrk+R+++k Aradu.5F7WV 51 PKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRMQLQEYGQVGDANVFYWFQNRKSRSKHK 113 689**********************************************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.2E-7	41	111	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.06E-12	46	115	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.43	48	113	IPR001356	Homeobox domain
SMART	SM00389	1.9E-8	50	117	IPR001356	Homeobox domain
CDD	cd00086	2.10E-8	51	113	No hit	No description
Pfam	PF00046	2.3E-15	52	112	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence Send to blast
MASSNRHWPS MFKSKPCNQF QHDMVSTTTA SCHRSAPYNP ISGCDEKSPE PKPRWNPKPE 60 QIRILEAIFN SGMVNPPRDE IRKIRMQLQE YGQVGDANVF YWFQNRKSRS KHKLRHLTNN 120 NSRNNNTPSP SPPPPLPPQQ QFISATTNSS SSSSSDKSSP KFVPAFTDVV MLLPNSPTAS 180 VNQNYFHHND TNNNNTINHL LVPPPLPIEP FFPVFHNSSG VVATTEISNS VGNHHQPPHL 240 VYQENVDPCT DLLLSEIMSH GGVEPSSKRY HEQDKAAATV KIRQPQQYIS FCPVSTPPPS 300 FTNTTATPIT VPSPFQARFN LYAFYVHMRL DSVWCVSGAG GGCGSGDASA AKCTVYINDM 360 ACEVDVGPFN VRHAFGDEAV LIDSSGHTVL TDDWGVTLHP LQHGFSYYLI WFLSFFLSPP

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence Send to blast

MASSNRHWPS MFKSKPCNQF QHDMVSTTTA SCHRSAPYNP ISGCDEKSPE PKPRWNPKPE  60
QIRILEAIFN SGMVNPPRDE IRKIRMQLQE YGQVGDANVF YWFQNRKSRS KHKLRHLTNN  120
NSRNNNTPSP SPPPPLPPQQ QFISATTNSS SSSSSDKSSP KFVPAFTDVV MLLPNSPTAS  180
VNQNYFHHND TNNNNTINHL LVPPPLPIEP FFPVFHNSSG VVATTEISNS VGNHHQPPHL  240
VYQENVDPCT DLLLSEIMSH GGVEPSSKRY HEQDKAAATV KIRQPQQYIS FCPVSTPPPS  300
FTNTTATPIT VPSPFQARFN LYAFYVHMRL DSVWCVSGAG GGCGSGDASA AKCTVYINDM  360
ACEVDVGPFN VRHAFGDEAV LIDSSGHTVL TDDWGVTLHP LQHGFSYYLI WFLSFFLSPP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.5F7WV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020994701.1	0.0	WUSCHEL-related homeobox 8-like isoform X2
TrEMBL	A0A445DQU3	0.0	A0A445DQU3_ARAHY; Uncharacterized protein
STRING	XP_007148089.1	1e-113	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3824	33	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33880.1	6e-58	homeobox-3