PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.577R9
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family TALE
Protein Properties Length: 315aa    MW: 35873.5 Da    PI: 5.0471
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.577R9genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.13e-082492822255
                  SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
     Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                   +yp++ee+  L++ +gL+ +q+ +WF N+R ++
  Aradu.577R9 249 WPYPTEEEKLMLSEMTGLDIKQINNWFINQRKRH 282
                  58*****************************885 PP
2ELK37.45.4e-13202223122
          ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                  ELK++Ll+KYsgyL+sL++EF+
  Aradu.577R9 202 ELKEMLLQKYSGYLSSLRKEFL 223
                  9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.5E-2161105IPR005540KNOX1
PfamPF037904.8E-2263104IPR005540KNOX1
SMARTSM012562.6E-25109160IPR005541KNOX2
PfamPF037911.9E-24112159IPR005541KNOX2
PROSITE profilePS5121311.401202222IPR005539ELK domain
PfamPF037892.4E-10202223IPR005539ELK domain
SMARTSM011886.1E-7202223IPR005539ELK domain
PROSITE profilePS5007111.936222285IPR001356Homeobox domain
SuperFamilySSF466891.2E-19224297IPR009057Homeodomain-like
SMARTSM003897.8E-12224289IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.8E-27227287IPR009057Homeodomain-like
PfamPF059202.9E-17242281IPR008422Homeobox KN domain
CDDcd000865.44E-11248286No hitNo description
PROSITE patternPS000270260283IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MEDFYIKLSN NNNNNFEACS SEEDVVVTAS KLHLTEATTS VGVGSNYLLQ LAAPDPDMSD  60
PVIKAQIANH PRYPDLLSAY IQCQKVGAPP EVASLLEEIS RESHPMDTRR RQIGDDPELD  120
DFMESYCNVL HKYKEELSKP FNEATLFLCN IESQLSNLCK GTLTISLDTN NNHRSDEAAG  180
SCSSEVEGIE FGYGTRGVGD KELKEMLLQK YSGYLSSLRK EFLKKRKKGK LPKDARIALM  240
DWWNSHYRWP YPTEEEKLML SEMTGLDIKQ INNWFINQRK RHWKPSSEMR FGVMEGPSIP  300
RCDPYVALIS ELSDV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1217226LRKEFLKKRK
2223227KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.577R9
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1352581e-60BT135258.1 Lotus japonicus clone JCVI-FLLj-1I9 unknown mRNA.
GenBankBT1443361e-60BT144336.1 Lotus japonicus clone JCVI-FLLj-11L21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015939677.10.0homeobox protein knotted-1-like 1
SwissprotQ9FP292e-93KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLA0A445BL190.0A0A445BL19_ARAHY; Uncharacterized protein
STRINGGLYMA20G22986.11e-121(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62034125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.11e-75KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]