PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.56PCA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | FAR1 | ||||||||
Protein Properties | Length: 213aa MW: 24034.4 Da PI: 4.8205 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 59.8 | 8.3e-19 | 116 | 205 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 Y+e+A + GF v+k + +g ++r+ C ++g+r++++ + e+ r++r e+rt+Ckaklk+ + d++w+v k+ eHnH++ap Aradu.56PCA 116 AYKEFAWTRGFGVCKGDVGRV--DGVLVRRDIFCHRQGTRSDKHYDrPERVREERLESRTDCKAKLKIYYDVhDNVWRVRKIIDEHNHDMAP 205 59**************99998..9*****************9998856778899***************9999***************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.8E-17 | 116 | 205 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MMNNSSTIPS CNFESDACVI NRTSPIGFNS GKMDFDLYSS DNDEESSEMS LGVCGSSGSS 60 DDDDSTSLFG IGTSHSESNK ESHRSEGDVH GKVPVLLTAE DFLHTVFTSE EEAYNAYKEF 120 AWTRGFGVCK GDVGRVDGVL VRRDIFCHRQ GTRSDKHYDR PERVREERLE SRTDCKAKLK 180 IYYDVHDNVW RVRKIIDEHN HDMAPAEFCN LLP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.56PCA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025702836.1 | 1e-131 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A445D673 | 1e-131 | A0A445D673_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF17191 | 2 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22170.2 | 4e-07 | far-red elongated hypocotyls 3 |