PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.4WT7F

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

ARF

Protein Properties

Length: 869aa MW: 96638.9 Da PI: 6.9173

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.4WT7F	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	72	7.7e-23	156	262	1	99
EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 f+k+lt sd++++g +++ +++a+e + k++ +++l+ +d++ ++W++++i+r++++r++l++GW+ Fv++++L +gD ++F +++r ++ Aradu.4WT7F 156 FCKTLTASDTSTHGGFSVLRRHADEDcssfgqdmS-KQPPTQELVAKDLHANEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRTSRgEN 252 99*******************9999*963.4445569********************************************99999 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+v+v+r+ Aradu.4WT7F 253 GELRVGVRRA 262 *******996 PP
2	Auxin_resp	117.7	9.9e-39	287	369	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+ t+++F+v+Y+Pr+s++eF+v++++++++lk+++++GmRfkm+fe+e+++e+r++Gt+vg++d+d+ rWp+SkWr+Lk Aradu.4WT7F 287 AWHAILTGTIFTVYYKPRTSPAEFIVPYDQYMESLKNNYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDADSKRWPESKWRCLK 369 79*******************************************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	3.14E-33	152	290	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.5E-33	153	276	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.50E-17	154	261	No hit	No description
PROSITE profile	PS50863	11.011	156	263	IPR003340	B3 DNA binding domain
SMART	SM01019	1.4E-15	156	263	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.6E-20	156	262	IPR003340	B3 DNA binding domain
Pfam	PF06507	3.2E-36	287	369	IPR010525	Auxin response factor
Pfam	PF02309	3.9E-12	721	826	IPR033389	AUX/IAA domain
PROSITE profile	PS51745	24.392	738	820	IPR000270	PB1 domain
SuperFamily	SSF54277	2.06E-11	738	815	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009725	Biological Process	response to hormone
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 869 aa Download sequence Send to blast
MASSEAATTI KVNGNSHNNN NNNNNSSELN NNVHSSSSSS TSPKDAEAAL YRELWHACAG 60 PLVTVPREGE RVFYFPQGHI EQVEASTNQV ADQHMPVYDL PSKILCRVIN VQLKAEPDTD 120 EVFAQITLLP EQNQDENAVE KEPPLPPPPR FHVHSFCKTL TASDTSTHGG FSVLRRHADE 180 DCSSFGQDMS KQPPTQELVA KDLHANEWRF RHIFRGQPRR HLLQSGWSVF VSSKRLVAGD 240 AFIFLRTSRG ENGELRVGVR RAMRQQGNVP SSVISSHSMH LGVLATAWHA ILTGTIFTVY 300 YKPRTSPAEF IVPYDQYMES LKNNYTIGMR FKMRFEGEEA PEQRFTGTIV GIEDADSKRW 360 PESKWRCLKV RWDETSNIPR PERVSPWKIE PALAPPALNP LSMPRAKRPR SNVPNVPIQS 420 SQDSSVLTRE ASSKVSADPS PANGFPRVLQ GQEFSTLRGN FAESNESDTA EKSVVWPPVD 480 DEKVDVVSMS RRYGSENWMS MGRHDTSYSD LLSGFGASGD PSHPSLGDQM GGPVAYSARK 540 HVLDREGKLN VHHPWPAMSS GFSLNLLEPS TKESPRGSET PYQARGNLRY GPFSEYPVIP 600 GHKVEHPHGK LMLPPPPTQY ESPCSRDLMS KPMSAKTYET AKPKEGDCKL FGISLISSPT 660 AAPEPSVSHR SGTTEPAGQA HLKSHHQRTS ENDQKTEQSK GLKSADGQVI VDDHDKPSKT 720 SQVHLKDGQA KPLSSSARSC TKVHKKGIAL GRSVDLTKYS NYDELVAELD QLFEFGGELM 780 STRKDWLIVY TDNEGDMMLV GDDPWQEFCA MVRKIYIYPK EEIQKMSPGT LSSRNEENHS 840 ASEGTEAKEV KSQLHQKLNS ESVATVHDN

Sequence ? help Back to Top

Protein Sequence Length: 869 aa Download sequence Send to blast

MASSEAATTI KVNGNSHNNN NNNNNSSELN NNVHSSSSSS TSPKDAEAAL YRELWHACAG  60
PLVTVPREGE RVFYFPQGHI EQVEASTNQV ADQHMPVYDL PSKILCRVIN VQLKAEPDTD  120
EVFAQITLLP EQNQDENAVE KEPPLPPPPR FHVHSFCKTL TASDTSTHGG FSVLRRHADE  180
DCSSFGQDMS KQPPTQELVA KDLHANEWRF RHIFRGQPRR HLLQSGWSVF VSSKRLVAGD  240
AFIFLRTSRG ENGELRVGVR RAMRQQGNVP SSVISSHSMH LGVLATAWHA ILTGTIFTVY  300
YKPRTSPAEF IVPYDQYMES LKNNYTIGMR FKMRFEGEEA PEQRFTGTIV GIEDADSKRW  360
PESKWRCLKV RWDETSNIPR PERVSPWKIE PALAPPALNP LSMPRAKRPR SNVPNVPIQS  420
SQDSSVLTRE ASSKVSADPS PANGFPRVLQ GQEFSTLRGN FAESNESDTA EKSVVWPPVD  480
DEKVDVVSMS RRYGSENWMS MGRHDTSYSD LLSGFGASGD PSHPSLGDQM GGPVAYSARK  540
HVLDREGKLN VHHPWPAMSS GFSLNLLEPS TKESPRGSET PYQARGNLRY GPFSEYPVIP  600
GHKVEHPHGK LMLPPPPTQY ESPCSRDLMS KPMSAKTYET AKPKEGDCKL FGISLISSPT  660
AAPEPSVSHR SGTTEPAGQA HLKSHHQRTS ENDQKTEQSK GLKSADGQVI VDDHDKPSKT  720
SQVHLKDGQA KPLSSSARSC TKVHKKGIAL GRSVDLTKYS NYDELVAELD QLFEFGGELM  780
STRKDWLIVY TDNEGDMMLV GDDPWQEFCA MVRKIYIYPK EEIQKMSPGT LSSRNEENHS  840
ASEGTEAKEV KSQLHQKLNS ESVATVHDN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4ldv_A	1e-172	49	391	18	354	Auxin response factor 1
4ldw_A	1e-172	49	391	18	354	Auxin response factor 1
4ldw_B	1e-172	49	391	18	354	Auxin response factor 1
4ldx_A	1e-172	49	391	18	354	Auxin response factor 1
4ldx_B	1e-172	49	391	18	354	Auxin response factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs) (By similarity). Could act as transcriptional activator or repressor (PubMed:26959229, PubMed:26716451, PubMed:27645097, PubMed:28167023). Involved in the control of fruit ripening process (PubMed:26959229, PubMed:26716451, PubMed:28167023). Regulates expression of a number of ripening regulators, transcription factors, and ethylene biosynthesis and signaling components (PubMed:26959229, PubMed:26716451). May act as a transcriptional repressor of auxin-responsive genes (PubMed:26716451). Regulates vegetative growth, lateral root formation and flower organ senescence, possibly partially by regulating gene expression of auxin and ethylene response factor (ERF) genes (PubMed:28167023). Plays a negative role in axillary shoot meristem formation (PubMed:27645097). {ECO:0000255\|RuleBase:RU004561, ECO:0000269\|PubMed:26716451, ECO:0000269\|PubMed:26959229, ECO:0000269\|PubMed:27645097, ECO:0000269\|PubMed:28167023}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.4WT7F

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By tomato fruit ripening. Expression in tomato fruits is up-regulated by exogenous application of ethylene and down-regulated by inhibition of ethylene receptors with 1-methylcyclopropene (1-MCP) (PubMed:26959229, PubMed:26716451). Up-regulated by plant hormone abscisic acid (ABA) in tomato fruits (PubMed:26959229). Expression is not up-regulated by plant hormone auxin in tomato fruits (PubMed:26716451). Up-regulated by auxin and gibberellic acid (GA), and down-regulated by ethylene in seedlings (PubMed:28167023). Down-regulated during decapitation-induced axillary shoot development and by excision of immature leaves. Down-regulation is inhibited by the application of auxin on the cut surface (PubMed:27645097). {ECO:0000269\|PubMed:26716451, ECO:0000269\|PubMed:26959229, ECO:0000269\|PubMed:27645097, ECO:0000269\|PubMed:28167023}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015937797.1	0.0	auxin response factor 2 isoform X1
Swissprot	Q2LAJ3	0.0	ARF2A_SOLLC; Auxin response factor 2A
TrEMBL	A0A445C1V1	0.0	A0A445C1V1_ARAHY; Auxin response factor
STRING	GLYMA06G17320.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3281	33	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62000.3	0.0	auxin response factor 2

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Breitel DA, et al. AUXIN RESPONSE FACTOR 2 Intersects Hormonal Signals in the Regulation of Tomato Fruit Ripening. PLoS Genet., 2016. 12(3): p. e1005903 [PMID:26959229] Xu T, et al. SlARF2a plays a negative role in mediating axillary shoot formation. Sci Rep, 2016. 6: p. 33728 [PMID:27645097] Ren Z,Liu R,Gu W,Dong X The Solanum lycopersicum auxin response factor SlARF2 participates in regulating lateral root formation and flower organ senescence. Plant Sci., 2017. 256: p. 103-111 [PMID:28167023]