PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.4D7HL
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 568aa    MW: 62866 Da    PI: 8.4771
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.4D7HLgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.24.3e-0990117128
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIa 28 
                      +g WT+eEde l +av+ + g++Wk+I 
      Aradu.4D7HL  90 KGGWTAEEDETLRNAVATYKGKNWKKIL 117
                      688***********************96 PP
2Myb_DNA-binding44.82.8e-14144183848
                      HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      Ed+++v++v ++G+  W++Iar ++ gR +kqc++rw+++l
      Aradu.4D7HL 144 EDDKIVELVSKFGPTKWSLIARSLP-GRIGKQCRERWHNHL 183
                      9************************.*************97 PP
3Myb_DNA-binding55.51.3e-17189232146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++WT +E++ l++a++ +G++ W+ Ia+ ++ gRt++ +k++w++
      Aradu.4D7HL 189 KDAWTLDEELALINAHHTHGNK-WAEIAKVLP-GRTDNAIKNHWNS 232
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.79685116IPR017877Myb-like domain
SuperFamilySSF466892.23E-687121IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-788117IPR009057Homeodomain-like
SMARTSM00717289133IPR001005SANT/Myb domain
PfamPF002491.2E-690117IPR001005SANT/Myb domain
PROSITE profilePS5129414.761133183IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.9E-23143190IPR009057Homeodomain-like
SMARTSM007176.8E-8143185IPR001005SANT/Myb domain
CDDcd001671.16E-11144183No hitNo description
PfamPF002498.1E-13144183IPR001005SANT/Myb domain
SuperFamilySSF466897.34E-28162239IPR009057Homeodomain-like
PROSITE profilePS5129426.466184238IPR017930Myb domain
SMARTSM007175.6E-17188236IPR001005SANT/Myb domain
PfamPF002494.3E-16189232IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-23191238IPR009057Homeodomain-like
CDDcd001676.00E-13191234No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MGRGLCYWCD EKSGICFHAI EPQKTRIPLS HKVYLKTEAC CLENKQSTAA SCSSVSEGSG  60
SPINKSTEMC SPASTSPLHR RTTGPIRRAK GGWTAEEDET LRNAVATYKG KNWKKILLSI  120
FLIEQKFNAF TDGKKFSIQN LLKEDDKIVE LVSKFGPTKW SLIARSLPGR IGKQCRERWH  180
NHLNPDIKKD AWTLDEELAL INAHHTHGNK WAEIAKVLPG RTDNAIKNHW NSSLKKKLDF  240
YLATGRLPPV PKNNAQVAVK DTIRLSTSKT IPVCSSKELN LAVKTPSEPT TISMLDESGM  300
NQSSPGTVRD VRDSSSVPAN ESADSDGVEC KPGSSNIDLA CSNSKPVSIV NFRITCGTNF  360
ENSGLSVNSK FERCVDNCEM SCSSRSIRTT FSQESPTCGS LCYEPPQLSG SVPLDYLSLS  420
LQNEYCSNPM LSPIDYFTPA SVKGSELCSE TPESFLKKAA DTFPNTPSIL RRRRNRVETQ  480
TPPCKLLKVE NHSCTSNESE RTKDNSGSEV GRFSENPASH DNESDLPKAY NASPPYQLRS  540
KRTAVLKSVE KQLEFAFEEK KMKAISTE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-42892385159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-42892385159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.4D7HL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020996209.10.0transcription factor MYB3R-3 isoform X2
TrEMBLA0A445DGJ90.0A0A445DGJ9_ARAHY; Uncharacterized protein
STRINGGLYMA18G39740.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66163449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-111myb domain protein 3r-5