PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.49X9J
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 276aa    MW: 32127.2 Da    PI: 5.2922
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.49X9JgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR155.71.7e-17201271171
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkke 71 
                  +fYn+YA++ GFs rk++s+ks r g  + ++fvC +eg+r +++    + +r++++etr+gC a+++++ +
  Aradu.49X9J 201 EFYNRYARTRGFSARKNRSRKS-RAGALKLKNFVCHREGFRLQNNYGiGNLKRKPTPETRCGCSAMMEIRVD 271
                  6********************9.7777**************999888788999***************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513756.3582050IPR002885Pentatricopeptide repeat
PfamPF130417.5E-95197IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.7995181IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007563.5E-55380IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.4185120IPR002885Pentatricopeptide repeat
PfamPF031013.0E-14201271IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
FENLKWSSEL VSLERPDSWL EKVKTTLIDI YAKCGSVRVA RALFEMLREK RVVSWNAIIT  60
GYAMHGLAKE ALELFEVMRK EARPDLITFV GVLAACSRGL LLNEGQAFYD MMMRDYGINP  120
TVQHYTCMEV VGQEFSHEGV NSEHTSYDQY EQEEEKYEEV DVDYMDEDDT SVEPMFDYHG  180
FDERDEDVYH FHFSDVDIAF EFYNRYARTR GFSARKNRSR KSRAGALKLK NFVCHREGFR  240
LQNNYGIGNL KRKPTPETRC GCSAMMEIRV DAPSGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D9e-122312889295PLS9-PPR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.49X9J
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015948985.11e-125protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A445ERJ89e-85A0A445ERJ8_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1661226