PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.49B5R
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family TALE
Protein Properties Length: 361aa    MW: 41138.8 Da    PI: 8.302
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.49B5RgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.93.9e-092913281954
                  HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  Fe   ++yp+ +e+  L +++gL+ +qV++WF N R +
  Aradu.49B5R 291 FEHflHPYPTDSEKDTLVQQTGLSRCQVSNWFINARVR 328
                  564459******************************88 PP
2BELL803.2e-26173240572
         BELL   5 lqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  ++ + + L  +l+eV+k+Y  y++q+q v+ssF+ vaglg+a+pY+s+  k iS+hF cLk ai +q+
  Aradu.49B5R 173 HHCRDSVLGCMLDEVYKKYILYCQQMQSVVSSFQKVAGLGNATPYISFGIKSISKHFGCLKHAIYDQL 240
                  6677788899*******************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.5E-23117238IPR006563POX domain
PfamPF075262.0E-26122236IPR006563POX domain
PROSITE profilePS5007111.612269332IPR001356Homeobox domain
SMARTSM003892.7E-10272336IPR001356Homeobox domain
CDDcd000861.78E-12273333No hitNo description
Gene3DG3DSA:1.10.10.601.5E-27275339IPR009057Homeodomain-like
SuperFamilySSF466894.15E-17276339IPR009057Homeodomain-like
PfamPF059201.1E-18289328IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MEENFESSHV PQQSRRNKLR EMVQTQKQQP PPQPFPPSFQ TSITQPFETN PISSTFISTK  60
PPYHYSFLAK SSSQLEHYPA SFHNLLLPPY LVDQNHHVPQ EPCSDVRNIG PVVVPFTGYA  120
SILKRSRFLK PAQQILEDMC GSVLNPPPRL NESGDDHEED PIIGTNGRDG VQHHCRDSVL  180
GCMLDEVYKK YILYCQQMQS VVSSFQKVAG LGNATPYISF GIKSISKHFG CLKHAIYDQL  240
QFTMKNTTPA SNNVVEKGLQ SVQRLHSVQP VLRSQRGLPD HAVALLRRWL FEHFLHPYPT  300
DSEKDTLVQQ TGLSRCQVSN WFINARVRIW KPMVEEMHMN GEQKAQESEV IHHARKPIIG  360
P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A1e-15273329865Homeobox protein PKNOX1
3k2a_A1e-15278336563Homeobox protein Meis2
3k2a_B1e-15278336563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.49B5R
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015931396.10.0BEL1-like homeodomain protein 9
SwissprotQ9LZM87e-63BLH9_ARATH; BEL1-like homeodomain protein 9
TrEMBLA0A445C5Q90.0A0A445C5Q9_ARAHY; Uncharacterized protein
STRINGXP_008233506.13e-92(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28103373
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.12e-65TALE family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Pabón-Mora N,Wong GK,Ambrose BA
    Evolution of fruit development genes in flowering plants.
    Front Plant Sci, 2014. 5: p. 300
    [PMID:25018763]
  3. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]
  4. Andrés F, et al.
    Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE.
    Plant Physiol., 2015. 169(3): p. 2187-99
    [PMID:26417007]
  5. Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R
    Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis.
    Dev. Cell, 2016. 39(2): p. 198-208
    [PMID:27666746]
  6. Sehra B,Franks RG
    Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development.
    Front Plant Sci, 2017. 8: p. 1712
    [PMID:29085379]
  7. Simonini S,Stephenson P,Østergaard L
    A molecular framework controlling style morphology in Brassicaceae.
    Development, 2018.
    [PMID:29440299]