PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.48EM9 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | MYB_related | ||||||||
Protein Properties | Length: 190aa MW: 21313.4 Da PI: 10.5787 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.4 | 2.5e-11 | 5 | 55 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+ l+ +v ++G g W+tI R+ ++k++w++ Aradu.48EM9 5 KQKWTAEEEAALKAGVVKHGAGKWRTILTDPEfsailRMRSNVDLKDKWRN 55 79***********************************9************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.774 | 1 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.32E-15 | 2 | 68 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.1E-5 | 4 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.8E-13 | 4 | 56 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.5E-7 | 5 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 1.14E-17 | 6 | 57 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MGAPKQKWTA EEEAALKAGV VKHGAGKWRT ILTDPEFSAI LRMRSNVDLK DKWRNINVTA 60 IWGSRQKAKL ALKKNLLLPA PKIDNNHMAL STAVRHDENV LETKPLAICG LSLPSHNSKQ 120 QLSRLERKLS ISYKPCKVTA NKTEAYGGYW QNNQGSEKRR YSSSTLLQEG RPRDSPEAEK 180 SHDVNILSKS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.48EM9 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025698577.1 | 1e-95 | telomere repeat-binding factor 2 | ||||
Swissprot | Q9FJW5 | 3e-39 | TRB2_ARATH; Telomere repeat-binding factor 2 | ||||
TrEMBL | A0A445ET15 | 2e-94 | A0A445ET15_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA17G17370.1 | 1e-71 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1453 | 33 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67580.2 | 6e-35 | MYB_related family protein |
Publications ? help Back to Top | |||
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