PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.47KHH
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 380aa    MW: 43613.4 Da    PI: 9.6921
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.47KHHgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.92.8e-111194186
                 EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
           B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86
                 ffkv + ++ l  g l+lpk+f+ ++ +++  +s+ + l  ++g + ev  + r   g ++++ GWkeF++   L++  f++F+++ 
  Aradu.47KHH 11 FFKVILEKNLLGDGFLRLPKSFVHKYwKEI--TSRSVFLSLPNGAELEVHWS-RDENGDVLFGHGWKEFAQYVSLQATQFLLFRYEV 94
                 89999999***************9997655..556799999**********4.3333459************************974 PP
2B344.72.4e-142783541087
                  HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
           B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87 
                  ++ +++lv+p  fa+ + gk e++ +l l d   + W+v++  r + +r +++t+GWk+F     Lk gD +vF+l++ 
  Aradu.47KHH 278 YSDRDLLVIPSYFAKPILGKREGNAKLFLVDDPKKCWDVQM--RISACRqFIITNGWKKFSTFYSLKLGDACVFELVDP 354
                  567899***********88889999****************..666666699***********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.7E-14498IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-14593IPR015300DNA-binding pseudobarrel domain
CDDcd100174.93E-111093No hitNo description
PfamPF023622.0E-91194IPR003340B3 DNA binding domain
SMARTSM010190.001411101IPR003340B3 DNA binding domain
PROSITE profilePS508639.72811126IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.6E-17262364IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.45E-17263365IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.182269365IPR003340B3 DNA binding domain
SMARTSM010194.7E-7270367IPR003340B3 DNA binding domain
PfamPF023621.2E-11278364IPR003340B3 DNA binding domain
CDDcd100171.01E-11284365No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MSSQERDVVH FFKVILEKNL LGDGFLRLPK SFVHKYWKEI TSRSVFLSLP NGAELEVHWS  60
RDENGDVLFG HGWKEFAQYV SLQATQFLLF RYEVKKTNNN NNNNNNNNNN NNNNNNKFYV  120
IVLGSSGLEI KYPCSNSVSK KKNDNVNVNV VEKGQKGEKK SDACSFEFVN GKRRKSLLSP  180
LQSPPPPPPL VISDDETSSF KRKKIIKEEP EDYSIDGEIS NTKRKRRASR SFDYIAKEKD  240
YDNSEVLDNK TMKKFQEKVK SRFQTGNPFF VCALGKTYSD RDLLVIPSYF AKPILGKREG  300
NAKLFLVDDP KKCWDVQMRI SACRQFIITN GWKKFSTFYS LKLGDACVFE LVDPIDILFK  360
VHIRSYGEDP LTPSSSGDTN
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.47KHH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020989096.10.0integrator complex subunit 1 homolog isoform X4
TrEMBLA0A445B0U50.0A0A445B0U5_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF140231017
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.11e-07B3 family protein