PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.44JDK
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MIKC_MADS
Protein Properties Length: 217aa    MW: 25009.7 Da    PI: 9.1334
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.44JDKgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.83.3e-291464151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krien + rqvtfskRr g+lKKA+ELSvLCda++a+iifs++g+l+eyss
  Aradu.44JDK 14 KRIENATSRQVTFSKRRSGLLKKAHELSVLCDAQIALIIFSQSGRLFEYSS 64
                 79***********************************************96 PP
2K-box67.54.5e-23991742297
        K-box  22 akLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                    L k+ie L+ +qR+l+G++L+s+s+ eL  +e+qL +sl++iR kK +l++e+ie+lq+kek+l  en +L+++
  Aradu.44JDK  99 PSLAKKIELLELSQRKLMGQGLSSCSFDELVGIENQLVSSLQNIRLKKAQLYREHIEQLQNKEKDLLLENAKLTEM 174
                  5799********************************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.3E-41665IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.015666IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.06E-32883IPR002100Transcription factor, MADS-box
PROSITE patternPS003500862IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-30828IPR002100Transcription factor, MADS-box
CDDcd002655.57E-42882No hitNo description
PfamPF003192.0E-251562IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-302843IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-304364IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.88591181IPR002487Transcription factor, K-box
PfamPF014864.0E-2099175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MEKKKMVRGK IEMKRIENAT SRQVTFSKRR SGLLKKAHEL SVLCDAQIAL IIFSQSGRLF  60
EYSSTSDMDQ LLERYRQYVA DDGRINNIGE FQQLEFDPPS LAKKIELLEL SQRKLMGQGL  120
SSCSFDELVG IENQLVSSLQ NIRLKKAQLY REHIEQLQNK EKDLLLENAK LTEMCVQRKK  180
SEEQWGKQRG ATLSPSPSNQ SSVLVETELF IGLPEWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A2e-22878271Myocyte-specific enhancer factor 2A
3kov_B2e-22878271Myocyte-specific enhancer factor 2A
3kov_I2e-22878271Myocyte-specific enhancer factor 2A
3kov_J2e-22878271Myocyte-specific enhancer factor 2A
3p57_A2e-22878271Myocyte-specific enhancer factor 2A
3p57_B2e-22878271Myocyte-specific enhancer factor 2A
3p57_C2e-22878271Myocyte-specific enhancer factor 2A
3p57_D2e-22878271Myocyte-specific enhancer factor 2A
3p57_I2e-22878271Myocyte-specific enhancer factor 2A
3p57_J2e-22878271Myocyte-specific enhancer factor 2A
5f28_A1e-22678172MEF2C
5f28_B1e-22678172MEF2C
5f28_C1e-22678172MEF2C
5f28_D1e-22678172MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.44JDK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015967280.11e-154MADS-box protein AGL42-like
RefseqXP_020999117.11e-154MADS-box protein AGL42-like
RefseqXP_020999118.11e-154MADS-box protein AGL42-like
SwissprotQ9FIS17e-65AGL42_ARATH; MADS-box protein AGL42
TrEMBLA0A445CZV51e-131A0A445CZV5_ARAHY; Uncharacterized protein
STRINGGLYMA10G38541.12e-75(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66630102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.33e-67AGAMOUS-like 42